Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42907 * 109.46665 * 2 1 4 4 C 1.42897 * 113.99529 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47357 * 29.99683 * 4 3 2 6 6 C 1.50708 * 109.47053 * 269.99815 * 4 3 2 7 7 H 1.07997 * 119.99931 * 119.99785 * 6 4 3 8 8 C 1.37876 * 119.99994 * 300.00345 * 6 4 3 9 9 N 1.31518 * 119.99758 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 120.00092 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46991 * 90.00050 * 10 8 6 12 12 H 1.48499 * 109.47174 * 209.99601 * 10 8 6 13 13 H 1.48497 * 109.47025 * 330.00125 * 10 8 6 14 14 C 1.52998 * 109.47245 * 150.00309 * 4 3 2 15 15 C 1.53004 * 109.46624 * 294.99581 * 14 4 3 16 16 C 1.54270 * 110.48468 * 185.00074 * 15 14 4 17 17 C 1.53869 * 106.63967 * 217.73631 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.54895 * 104.19476 * 23.60777 * 18 17 16 20 20 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46769 * 299.99934 * 1 2 3 22 22 H 1.08996 * 109.47624 * 59.99753 * 1 2 3 23 23 H 1.08996 * 109.47147 * 240.00276 * 2 1 3 24 24 H 1.08996 * 109.47153 * 119.99999 * 2 1 3 25 25 H 0.97000 * 119.99695 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47155 * 174.99913 * 14 4 3 27 27 H 1.08997 * 109.47231 * 54.99255 * 14 4 3 28 28 H 1.08997 * 110.53944 * 307.61164 * 15 14 4 29 29 H 1.09002 * 110.03399 * 98.42629 * 16 15 14 30 30 H 1.08995 * 110.02943 * 337.04529 * 16 15 14 31 31 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 32 32 H 1.08996 * 110.03529 * 240.68999 * 17 16 15 33 33 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 34 34 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 35 35 H 1.09001 * 110.75082 * 80.37254 * 19 18 17 36 36 H 1.08991 * 110.75596 * 203.55944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4997 1.4201 7 1 4.6152 0.7412 1.7730 8 6 3.5188 2.5041 2.2694 9 7 2.6865 3.4274 1.8398 10 14 4.1396 2.5527 4.0305 11 1 5.3887 3.3536 4.0931 12 1 3.1095 3.1734 4.9015 13 1 4.4144 1.1698 4.4967 14 6 3.8403 2.7459 -0.7217 15 6 3.4411 2.6530 -2.1958 16 6 3.9536 3.8834 -2.9726 17 6 2.8610 4.2468 -3.9932 18 6 1.7219 3.2241 -3.8022 19 6 1.9005 2.7239 -2.3472 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.3960 4.1342 2.4372 26 1 4.9197 2.8775 -0.6452 27 1 3.3371 3.5965 -0.2620 28 1 3.8259 1.7346 -2.6391 29 1 4.8813 3.6386 -3.4899 30 1 4.1168 4.7157 -2.2880 31 1 2.4932 5.2551 -3.8034 32 1 3.2583 4.1783 -5.0059 33 1 0.7519 3.7064 -3.9234 34 1 1.8275 2.3993 -4.5069 35 1 1.4758 3.4357 -1.6392 36 1 1.4511 1.7392 -2.2193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261305295.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -91.084313 kcal Electronic energy + Delta-G solvation = -15127.656698 eV Core-core repulsion = 12803.101309 eV Total energy + Delta-G solvation = -2324.555389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52793 -37.88830 -34.92824 -32.77920 -31.13417 -29.37382 -28.79224 -25.83089 -23.33758 -22.52526 -21.10457 -20.44195 -18.54255 -17.30545 -16.67563 -16.23498 -15.89598 -15.50346 -14.70849 -14.43967 -14.18889 -13.99081 -13.49343 -13.11943 -12.87249 -12.65323 -12.50537 -12.36384 -12.15512 -11.97678 -11.86248 -11.66492 -11.40725 -11.26662 -11.16415 -11.03559 -10.78436 -10.50214 -9.59753 -8.00214 -6.25525 1.38396 1.39923 1.48940 2.42813 3.13808 3.62606 3.90051 3.97752 4.03201 4.34350 4.53051 4.62993 4.69790 4.72410 4.80572 4.83232 4.89363 4.93528 4.96567 5.05976 5.14389 5.17624 5.22877 5.32144 5.37339 5.42345 5.52243 5.65028 5.68255 5.71142 5.80275 6.08839 6.32496 6.70417 7.21917 7.54900 8.98046 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.010922 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.649062 B = 2562.971201 C = 3201.658255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.215 3.785 5 H -0.004 1.004 6 C -0.585 4.585 7 H 0.040 0.960 8 C 0.044 3.956 9 N -0.876 5.876 10 Si 0.942 3.058 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.274 1.274 14 C -0.089 4.089 15 C -0.089 4.089 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.094 4.094 20 H 0.086 0.914 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.034 0.966 24 H 0.016 0.984 25 H 0.258 0.742 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -1.127 -8.957 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 O -0.296 6.296 4 C 0.159 3.841 5 H 0.013 0.987 6 C -0.623 4.623 7 H 0.059 0.941 8 C -0.159 4.159 9 N -0.512 5.512 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.199 1.199 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.131 4.131 20 H 0.104 0.896 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.145 -0.791 -8.917 9.206 hybrid contribution 0.653 -0.238 1.442 1.601 sum -1.492 -1.029 -7.475 7.691 Atomic orbital electron populations 1.21638 0.93329 1.02296 1.01792 1.22269 0.95818 0.86476 0.97692 1.88039 1.23431 1.23486 1.94668 1.19584 0.79026 0.92682 0.92820 0.98654 1.21839 1.29388 1.11804 0.99245 0.94128 1.25576 0.94160 0.94754 1.01454 1.70112 1.31626 1.13412 1.36089 0.85836 0.78269 0.78130 0.80968 1.19853 1.20739 1.19913 1.21489 0.97794 1.00264 0.93156 1.22010 0.96295 0.97426 0.94985 1.22186 0.98794 0.97236 0.97431 1.22096 0.95424 0.98923 0.99012 1.22415 0.98553 0.98790 0.96238 1.22286 0.95142 1.00184 0.95531 0.89561 0.93932 0.92154 0.94794 0.96546 0.93284 0.94713 0.91219 0.92524 0.91385 0.93373 0.92071 0.90370 0.91446 0.91062 0.94211 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 10.28 71.98 0.74 -3.84 16 2 C 0.05 2.32 6.32 71.98 0.46 2.78 16 3 O -0.38 -19.05 6.92 -148.98 -1.03 -20.08 16 4 C 0.22 11.22 2.27 29.85 0.07 11.28 16 5 H 0.00 -0.23 7.79 -2.39 -0.02 -0.25 16 6 C -0.59 -33.47 8.90 25.60 0.23 -33.24 16 7 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 8 C 0.04 2.49 5.24 84.65 0.44 2.93 16 9 N -0.88 -50.85 10.93 21.45 0.23 -50.61 16 10 Si 0.94 44.30 29.54 68.60 2.03 46.33 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 C -0.09 -4.31 4.09 30.60 0.13 -4.19 16 15 C -0.09 -3.45 2.86 -9.69 -0.03 -3.48 16 16 C -0.12 -3.86 6.37 31.32 0.20 -3.66 16 17 C -0.12 -3.17 6.80 31.32 0.21 -2.96 16 18 C -0.12 -3.50 6.83 31.67 0.22 -3.28 16 19 C -0.09 -3.53 4.93 31.91 0.16 -3.38 16 20 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 3.81 6.10 -2.39 -0.01 3.80 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.68 7.84 -2.39 -0.02 1.67 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.73 7.97 -2.39 -0.02 1.72 16 36 H 0.05 2.13 7.07 -2.39 -0.02 2.12 16 Total: -1.00 -61.23 284.13 5.06 -56.18 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.01 Total: 9.21 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 2.82 Total: -41.03 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.23 Total: -50.61 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.03 Total: -20.08 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.23 5.06 -56.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305295.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.905 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds