Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.46931 * 2 1 4 4 C 1.42904 * 114.00327 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46505 * 330.00068 * 4 3 2 6 6 C 1.50699 * 109.47186 * 89.99534 * 4 3 2 7 7 H 1.07996 * 120.00075 * 240.00590 * 6 4 3 8 8 C 1.37881 * 120.00069 * 60.00371 * 6 4 3 9 9 N 1.31512 * 119.99545 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 119.99995 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47044 * 60.00204 * 10 8 6 12 12 H 1.48501 * 109.46894 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47102 * 299.99944 * 10 8 6 14 14 C 1.52997 * 109.47396 * 210.00003 * 4 3 2 15 15 C 1.53000 * 109.47060 * 64.99895 * 14 4 3 16 16 C 1.54264 * 110.03002 * 292.16491 * 15 14 4 17 17 C 1.54897 * 104.19675 * 217.10856 * 16 15 14 18 18 C 1.54887 * 102.74744 * 37.94098 * 17 16 15 19 19 C 1.53874 * 110.03037 * 175.00332 * 15 14 4 20 20 H 1.09001 * 109.46737 * 60.00433 * 1 2 3 21 21 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47317 * 300.00143 * 1 2 3 23 23 H 1.08997 * 109.47317 * 239.99857 * 2 1 3 24 24 H 1.09001 * 109.46737 * 119.99567 * 2 1 3 25 25 H 0.97005 * 119.99898 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47153 * 304.99576 * 14 4 3 27 27 H 1.09001 * 109.46832 * 184.99767 * 14 4 3 28 28 H 1.08994 * 110.02013 * 53.60972 * 15 14 4 29 29 H 1.08998 * 110.49133 * 335.78593 * 16 15 14 30 30 H 1.09000 * 110.48973 * 98.43075 * 16 15 14 31 31 H 1.08998 * 110.75483 * 279.63133 * 17 16 15 32 32 H 1.08991 * 110.91636 * 156.33038 * 17 16 15 33 33 H 1.09001 * 110.48698 * 203.37806 * 18 17 16 34 34 H 1.09006 * 110.48488 * 80.73848 * 18 17 16 35 35 H 1.09000 * 110.03070 * 238.57126 * 19 15 14 36 36 H 1.09006 * 110.03299 * 359.94372 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9323 1.4996 -1.4200 7 1 4.6153 0.7411 -1.7728 8 6 3.5189 2.5040 -2.2694 9 7 2.6875 3.4278 -1.8396 10 14 4.1399 2.5524 -4.0305 11 1 3.7419 1.3045 -4.7301 12 1 3.5515 3.7223 -4.7308 13 1 5.6203 2.6693 -4.0303 14 6 3.8403 2.7459 0.7218 15 6 3.4410 2.6531 2.1959 16 6 1.9042 2.6641 2.3287 17 6 1.6397 3.4902 3.6120 18 6 2.7158 4.6012 3.5310 19 6 3.9571 3.8848 2.9603 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.3964 4.1343 -2.4372 26 1 3.3371 3.5965 0.2619 27 1 4.9197 2.8774 0.6453 28 1 3.8481 1.7429 2.6361 29 1 1.4499 3.1472 1.4637 30 1 1.5239 1.6490 2.4434 31 1 1.7831 2.8777 4.5021 32 1 0.6384 3.9206 3.5982 33 1 2.9279 4.9999 4.5231 34 1 2.3927 5.3972 2.8601 35 1 4.6140 3.5722 3.7720 36 1 4.4928 4.5482 2.2812 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261305312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -75.917543 kcal Electronic energy + Delta-G solvation = -15170.479421 eV Core-core repulsion = 12846.581713 eV Total energy + Delta-G solvation = -2323.897708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.95693 -36.15304 -32.92931 -30.94205 -29.51820 -27.96808 -26.89350 -23.97036 -21.69524 -20.60119 -19.99856 -18.65142 -16.48213 -15.53942 -14.91820 -14.38160 -14.21944 -14.05428 -13.02512 -12.66941 -12.53664 -12.47553 -11.80684 -11.36579 -11.03743 -10.92859 -10.71068 -10.58495 -10.53696 -10.35977 -10.27312 -10.13900 -10.05276 -9.66772 -9.40492 -9.36592 -8.81848 -8.41105 -7.64580 -5.88313 -4.05739 3.33279 3.38244 3.40978 4.46889 5.14636 5.26448 5.34406 5.39226 5.52701 5.92659 5.99465 6.11533 6.14223 6.17453 6.24696 6.32416 6.34505 6.43797 6.45865 6.53435 6.68749 6.75057 6.78299 6.85484 6.89953 7.01026 7.08418 7.30844 7.41157 7.61176 7.85094 8.09702 8.40706 8.80483 9.20039 9.68666 11.11960 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.011258 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.208298 B = 2486.431996 C = 3117.938832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 O -0.362 6.362 4 C 0.218 3.782 5 H -0.003 1.003 6 C -0.560 4.560 7 H 0.050 0.950 8 C 0.087 3.913 9 N -0.855 5.855 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.278 1.278 14 C -0.098 4.098 15 C -0.091 4.091 16 C -0.097 4.097 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.119 4.119 20 H 0.057 0.943 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.033 0.967 24 H 0.017 0.983 25 H 0.258 0.742 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -0.694 7.537 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.162 3.838 5 H 0.015 0.985 6 C -0.598 4.598 7 H 0.068 0.932 8 C -0.118 4.118 9 N -0.491 5.491 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.136 4.136 15 C -0.110 4.110 16 C -0.135 4.135 17 C -0.168 4.168 18 C -0.159 4.159 19 C -0.157 4.157 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.962 -0.353 7.489 7.750 hybrid contribution 0.581 -0.283 -1.073 1.253 sum -1.381 -0.636 6.416 6.593 Atomic orbital electron populations 1.21682 0.96115 1.00055 1.02212 1.22010 0.93516 0.88049 0.97730 1.88065 1.24097 1.21263 1.94662 1.19592 0.78503 0.92031 0.93689 0.98499 1.21492 1.29074 1.11681 0.97528 0.93190 1.24920 0.93994 0.95119 0.97799 1.69957 1.30972 1.13139 1.35037 0.86856 0.79125 0.77464 0.85599 1.20380 1.21243 1.20319 1.21764 0.98863 1.02389 0.90565 1.21852 0.95689 0.95750 0.97704 1.22319 0.95716 0.99009 0.96437 1.22587 0.97884 0.97421 0.98940 1.22313 0.96103 0.98010 0.99463 1.22220 0.96990 0.97774 0.98729 0.92359 0.93150 0.92945 0.94834 0.96508 0.93179 0.88176 0.93770 0.93434 0.89867 0.92870 0.92838 0.92629 0.93055 0.91911 0.93296 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.28 37.16 0.38 -2.17 16 2 C 0.06 1.38 6.46 37.16 0.24 1.62 16 3 O -0.36 -8.97 6.73 -35.23 -0.24 -9.21 16 4 C 0.22 5.55 2.27 -27.89 -0.06 5.48 16 5 H 0.00 -0.07 7.79 -51.93 -0.40 -0.48 16 6 C -0.56 -15.65 8.90 -34.44 -0.31 -15.96 16 7 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 8 C 0.09 2.42 5.24 -17.82 -0.09 2.33 16 9 N -0.86 -24.25 10.93 55.43 0.61 -23.64 16 10 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C -0.10 -2.31 3.88 -26.73 -0.10 -2.42 16 15 C -0.09 -1.80 2.93 -89.50 -0.26 -2.06 16 16 C -0.10 -1.86 4.74 -25.07 -0.12 -1.98 16 17 C -0.13 -2.07 6.91 -24.74 -0.17 -2.24 16 18 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 19 C -0.12 -2.03 6.46 -25.61 -0.17 -2.20 16 20 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.10 2.64 6.08 -51.93 -0.32 2.32 16 27 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.85 7.13 -51.93 -0.37 1.48 16 30 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 LS Contribution 283.74 15.07 4.28 4.28 Total: -1.00 -28.18 283.74 -7.72 -35.90 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.51 Total: -2.00 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.83 Total: -21.65 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.61 Total: -23.64 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.24 Total: -9.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.18 -7.72 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.018 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds