Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.46931 * 2 1 4 4 C 1.42904 * 114.00327 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46505 * 330.00068 * 4 3 2 6 6 C 1.50699 * 109.47186 * 89.99534 * 4 3 2 7 7 H 1.07996 * 120.00075 * 240.00590 * 6 4 3 8 8 C 1.37881 * 120.00069 * 60.00371 * 6 4 3 9 9 N 1.31512 * 119.99545 * 0.02562 * 8 6 4 10 10 Si 1.86797 * 119.99995 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47044 * 60.00204 * 10 8 6 12 12 H 1.48501 * 109.46894 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47102 * 299.99944 * 10 8 6 14 14 C 1.52997 * 109.47396 * 210.00003 * 4 3 2 15 15 C 1.53000 * 109.47060 * 64.99895 * 14 4 3 16 16 C 1.54264 * 110.03002 * 292.16491 * 15 14 4 17 17 C 1.54897 * 104.19675 * 217.10856 * 16 15 14 18 18 C 1.54887 * 102.74744 * 37.94098 * 17 16 15 19 19 C 1.53874 * 110.03037 * 175.00332 * 15 14 4 20 20 H 1.09001 * 109.46737 * 60.00433 * 1 2 3 21 21 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47317 * 300.00143 * 1 2 3 23 23 H 1.08997 * 109.47317 * 239.99857 * 2 1 3 24 24 H 1.09001 * 109.46737 * 119.99567 * 2 1 3 25 25 H 0.97005 * 119.99898 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47153 * 304.99576 * 14 4 3 27 27 H 1.09001 * 109.46832 * 184.99767 * 14 4 3 28 28 H 1.08994 * 110.02013 * 53.60972 * 15 14 4 29 29 H 1.08998 * 110.49133 * 335.78593 * 16 15 14 30 30 H 1.09000 * 110.48973 * 98.43075 * 16 15 14 31 31 H 1.08998 * 110.75483 * 279.63133 * 17 16 15 32 32 H 1.08991 * 110.91636 * 156.33038 * 17 16 15 33 33 H 1.09001 * 110.48698 * 203.37806 * 18 17 16 34 34 H 1.09006 * 110.48488 * 80.73848 * 18 17 16 35 35 H 1.09000 * 110.03070 * 238.57126 * 19 15 14 36 36 H 1.09006 * 110.03299 * 359.94372 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8631 0.6017 0.5148 6 6 3.9323 1.4996 -1.4200 7 1 4.6153 0.7411 -1.7728 8 6 3.5189 2.5040 -2.2694 9 7 2.6875 3.4278 -1.8396 10 14 4.1399 2.5524 -4.0305 11 1 3.7419 1.3045 -4.7301 12 1 3.5515 3.7223 -4.7308 13 1 5.6203 2.6693 -4.0303 14 6 3.8403 2.7459 0.7218 15 6 3.4410 2.6531 2.1959 16 6 1.9042 2.6641 2.3287 17 6 1.6397 3.4902 3.6120 18 6 2.7158 4.6012 3.5310 19 6 3.9571 3.8848 2.9603 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.3964 4.1343 -2.4372 26 1 3.3371 3.5965 0.2619 27 1 4.9197 2.8774 0.6453 28 1 3.8481 1.7429 2.6361 29 1 1.4499 3.1472 1.4637 30 1 1.5239 1.6490 2.4434 31 1 1.7831 2.8777 4.5021 32 1 0.6384 3.9206 3.5982 33 1 2.9279 4.9999 4.5231 34 1 2.3927 5.3972 2.8601 35 1 4.6140 3.5722 3.7720 36 1 4.4928 4.5482 2.2812 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261305312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -90.456883 kcal Electronic energy + Delta-G solvation = -15171.109894 eV Core-core repulsion = 12846.581713 eV Total energy + Delta-G solvation = -2324.528182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58050 -37.87082 -34.91799 -32.75573 -31.11870 -29.36411 -28.78382 -25.82854 -23.33951 -22.51934 -21.32961 -20.23119 -18.54738 -17.29940 -16.66229 -16.19082 -15.90608 -15.58953 -14.73118 -14.42858 -14.15336 -13.94784 -13.46356 -13.10922 -12.87708 -12.65987 -12.50968 -12.29239 -12.23905 -11.89435 -11.83591 -11.65835 -11.49435 -11.28992 -11.14689 -11.05383 -10.76561 -10.49287 -9.59444 -8.00060 -6.25490 1.39627 1.39758 1.47512 2.42813 3.13738 3.63525 3.90268 3.97601 4.04802 4.34102 4.52977 4.63079 4.70762 4.72959 4.77149 4.84753 4.91015 4.94031 4.95339 5.06980 5.14715 5.19059 5.22702 5.31978 5.37178 5.40807 5.54281 5.63108 5.70434 5.76707 5.79661 6.09504 6.32615 6.70274 7.21754 7.54818 8.97988 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.011258 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.208298 B = 2486.431996 C = 3117.938832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.215 3.785 5 H -0.006 1.006 6 C -0.587 4.587 7 H 0.040 0.960 8 C 0.045 3.955 9 N -0.876 5.876 10 Si 0.942 3.058 11 H -0.277 1.277 12 H -0.280 1.280 13 H -0.271 1.271 14 C -0.089 4.089 15 C -0.090 4.090 16 C -0.093 4.093 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.118 4.118 20 H 0.042 0.958 21 H 0.085 0.915 22 H 0.059 0.941 23 H 0.016 0.984 24 H 0.033 0.967 25 H 0.258 0.742 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -0.761 8.741 9.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 O -0.295 6.295 4 C 0.159 3.841 5 H 0.012 0.988 6 C -0.624 4.624 7 H 0.058 0.942 8 C -0.158 4.158 9 N -0.512 5.512 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.197 1.197 14 C -0.127 4.127 15 C -0.108 4.108 16 C -0.130 4.130 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.155 4.155 20 H 0.061 0.939 21 H 0.104 0.896 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.269 -0.426 8.696 8.998 hybrid contribution 0.675 -0.332 -1.455 1.638 sum -1.594 -0.759 7.242 7.454 Atomic orbital electron populations 1.21633 0.93320 1.02280 1.01797 1.22265 0.95828 0.86521 0.97619 1.88040 1.23396 1.23411 1.94690 1.19587 0.79040 0.92690 0.92807 0.98768 1.21813 1.29498 1.11859 0.99271 0.94156 1.25564 0.94163 0.94709 1.01414 1.70098 1.31605 1.13373 1.36094 0.85906 0.78832 0.77497 0.81049 1.20226 1.20556 1.19658 1.21574 0.97685 1.00221 0.93199 1.21799 0.96366 0.97462 0.95209 1.22158 0.94868 0.99044 0.96975 1.22545 0.98670 0.97121 0.97580 1.22310 0.94955 0.97502 1.00778 1.22195 0.98050 0.96370 0.98897 0.93912 0.89596 0.92153 0.96608 0.94873 0.93251 0.91149 0.94825 0.92947 0.93614 0.93257 0.90707 0.91521 0.89971 0.92893 0.90942 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 10.28 71.98 0.74 -3.84 16 2 C 0.06 2.34 6.46 71.98 0.46 2.80 16 3 O -0.38 -19.01 6.73 -148.98 -1.00 -20.01 16 4 C 0.22 11.23 2.27 29.85 0.07 11.30 16 5 H -0.01 -0.29 7.79 -2.39 -0.02 -0.31 16 6 C -0.59 -33.60 8.90 25.60 0.23 -33.37 16 7 H 0.04 2.31 7.81 -2.91 -0.02 2.28 16 8 C 0.05 2.55 5.24 84.66 0.44 2.99 16 9 N -0.88 -50.75 10.93 21.45 0.23 -50.52 16 10 Si 0.94 44.28 29.54 68.60 2.03 46.30 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 C -0.09 -4.30 3.88 30.59 0.12 -4.19 16 15 C -0.09 -3.49 2.93 -10.07 -0.03 -3.52 16 16 C -0.09 -3.50 4.74 31.67 0.15 -3.35 16 17 C -0.12 -3.53 6.91 31.89 0.22 -3.31 16 18 C -0.12 -3.35 6.83 31.67 0.22 -3.14 16 19 C -0.12 -3.81 6.46 31.32 0.20 -3.60 16 20 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 25 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 26 H 0.07 3.85 6.08 -2.39 -0.01 3.83 16 27 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.06 7.13 -2.39 -0.02 2.05 16 30 H 0.05 1.85 7.89 -2.39 -0.02 1.83 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.71 7.67 -2.38 -0.02 1.69 16 Total: -1.00 -61.17 283.74 5.09 -56.08 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.01 Total: 9.38 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 2.82 Total: -41.23 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.23 Total: -50.52 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.00 Total: -20.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.17 5.09 -56.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.377 kcal (2) G-P(sol) polarization free energy of solvation -61.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds