Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99986 * 2 1 4 4 H 1.09001 * 109.47004 * 35.70794 * 3 2 1 5 5 C 1.50696 * 109.46986 * 155.70797 * 3 2 1 6 6 H 1.07997 * 120.00121 * 120.00270 * 5 3 2 7 7 C 1.37879 * 119.99873 * 299.99647 * 5 3 2 8 8 N 1.31510 * 120.00064 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47398 * 89.99681 * 9 7 5 11 11 H 1.48505 * 109.46959 * 209.99536 * 9 7 5 12 12 H 1.48494 * 109.47285 * 329.99452 * 9 7 5 13 13 C 1.52997 * 109.47100 * 275.70687 * 3 2 1 14 14 C 1.53001 * 109.47101 * 174.41543 * 13 3 2 15 15 C 1.53004 * 109.47181 * 174.15058 * 14 13 3 16 16 C 1.53001 * 109.46965 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47231 * 299.99998 * 16 15 14 18 18 C 1.53004 * 109.47144 * 60.00112 * 17 16 15 19 19 C 1.52994 * 109.47388 * 294.15284 * 14 13 3 20 20 H 1.08998 * 109.46949 * 182.08715 * 1 2 3 21 21 H 1.08997 * 109.47376 * 302.08775 * 1 2 3 22 22 H 1.09006 * 109.47262 * 62.08507 * 1 2 3 23 23 H 0.96998 * 120.00563 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.47365 * 54.41979 * 13 3 2 25 25 H 1.08996 * 109.47138 * 294.42293 * 13 3 2 26 26 H 1.09003 * 109.46897 * 54.15346 * 14 13 3 27 27 H 1.08993 * 109.46838 * 60.00191 * 15 14 13 28 28 H 1.09002 * 109.46807 * 300.00209 * 15 14 13 29 29 H 1.09002 * 109.46471 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.46785 * 60.00111 * 16 15 14 31 31 H 1.08997 * 109.47087 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47153 * 300.00266 * 17 16 15 33 33 H 1.09003 * 109.46970 * 60.00042 * 18 17 16 34 34 H 1.08998 * 109.47187 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47103 * 300.00098 * 19 14 13 36 36 H 1.09006 * 109.47289 * 59.99692 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3957 1.9768 0.5998 5 6 3.3976 1.2377 0.5845 6 1 4.2487 1.5384 -0.0084 7 6 3.5803 0.7917 1.8763 8 7 4.7911 0.7320 2.3863 9 14 2.1083 0.2710 2.9017 10 1 1.8534 -1.1782 2.7016 11 1 2.3879 0.5308 4.3368 12 1 0.9135 1.0463 2.4819 13 6 2.0867 1.8298 -1.4353 14 6 2.5785 3.2785 -1.4236 15 6 2.7943 3.7555 -2.8613 16 6 3.2868 5.2040 -2.8496 17 6 2.2433 6.0919 -2.1688 18 6 2.0275 5.6150 -0.7312 19 6 1.5346 4.1661 -0.7431 20 1 -0.3633 -1.0270 0.0374 21 1 -0.3634 0.5459 0.8706 22 1 -0.3634 0.4811 -0.9081 23 1 4.9198 0.4179 3.2949 24 1 1.0976 1.7856 -1.8915 25 1 2.7795 1.2153 -2.0101 26 1 3.5190 3.3384 -0.8759 27 1 1.8539 3.6955 -3.4090 28 1 3.5381 3.1231 -3.3461 29 1 3.4409 5.5436 -3.8738 30 1 4.2274 5.2635 -2.3020 31 1 2.5943 7.1238 -2.1601 32 1 1.3027 6.0324 -2.7164 33 1 2.9681 5.6745 -0.1836 34 1 1.2844 6.2478 -0.2460 35 1 0.5941 4.1061 -1.2907 36 1 1.3808 3.8263 0.2812 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261305765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = -80.916742 kcal Electronic energy + Delta-G solvation = -15039.804161 eV Core-core repulsion = 12715.689672 eV Total energy + Delta-G solvation = -2324.114490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.54418 -36.78205 -32.94204 -32.00969 -30.38007 -28.42036 -25.66123 -24.88031 -22.37229 -21.53827 -19.72861 -19.13385 -17.00857 -15.58108 -14.87216 -14.65335 -14.22365 -13.87070 -13.77586 -13.41765 -13.27876 -12.64638 -12.21008 -11.86808 -11.64561 -11.53080 -10.87331 -10.81642 -10.70036 -10.63175 -10.51583 -10.30021 -9.92411 -9.66631 -9.65354 -9.44989 -8.98727 -8.57256 -8.29780 -6.08469 -4.14780 3.40045 3.45416 3.51481 4.50215 4.80427 5.06398 5.12938 5.15317 5.54385 5.61523 5.66769 5.85503 5.88837 5.90429 5.93341 5.99230 6.01191 6.09362 6.20075 6.27833 6.31533 6.37495 6.47179 6.51850 6.55654 6.64239 6.70197 6.70728 6.95238 7.18588 7.23289 7.70371 8.44766 8.57021 8.94318 9.55340 11.01645 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.009956 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.734482 B = 2811.733993 C = 3088.121226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.507 4.507 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.303 1.303 12 H -0.271 1.271 13 C -0.118 4.118 14 C -0.079 4.079 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.113 4.113 20 H 0.065 0.935 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.265 0.735 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 7.445 -7.250 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.120 3.880 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.733 3.267 10 H -0.202 1.202 11 H -0.231 1.231 12 H -0.197 1.197 13 C -0.156 4.156 14 C -0.097 4.097 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.150 4.150 20 H 0.084 0.916 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.913 7.239 -7.110 12.278 hybrid contribution -0.929 -0.182 0.571 1.105 sum -7.841 7.057 -6.539 12.411 Atomic orbital electron populations 1.22626 0.85637 1.00639 0.98677 1.88197 1.15915 1.32951 1.93900 1.20453 0.94486 0.80977 0.92041 0.96189 1.21001 0.91178 1.44324 0.97890 0.90028 1.25058 0.95893 0.93473 0.97936 1.69929 1.21219 1.45923 1.15905 0.86477 0.83004 0.79883 0.77325 1.20195 1.23091 1.19657 1.21919 0.98937 0.95369 0.99384 1.21067 1.00129 0.93910 0.94626 1.21608 1.00389 0.95406 0.97685 1.21526 0.98862 0.95631 0.99589 1.21515 0.98976 0.98325 0.96563 1.21546 1.01271 0.96701 0.96166 1.21601 0.97937 0.94158 1.01314 0.91636 0.95346 0.95390 0.92577 0.94539 0.92197 0.89469 0.92922 0.92363 0.92870 0.91932 0.92803 0.92591 0.91759 0.92826 0.93221 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.36 101.05 1.05 1.47 16 2 O -0.39 -9.50 8.24 -35.23 -0.29 -9.79 16 3 C 0.18 4.23 1.40 -27.89 -0.04 4.19 16 4 H 0.02 0.50 5.11 -51.93 -0.27 0.23 16 5 C -0.51 -14.33 8.59 -34.44 -0.30 -14.62 16 6 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 7 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 8 N -0.89 -27.38 13.96 55.43 0.77 -26.61 16 9 Si 0.90 23.24 25.75 -169.99 -4.38 18.86 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 12 H -0.27 -6.63 5.52 56.52 0.31 -6.32 16 13 C -0.12 -2.41 4.36 -26.73 -0.12 -2.53 16 14 C -0.08 -1.43 2.08 -90.62 -0.19 -1.62 16 15 C -0.11 -1.72 5.20 -26.73 -0.14 -1.86 16 16 C -0.12 -1.59 5.92 -26.73 -0.16 -1.74 16 17 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 18 C -0.12 -1.72 5.93 -26.70 -0.16 -1.87 16 19 C -0.11 -1.88 4.98 -26.71 -0.13 -2.01 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 21 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 22 H 0.03 0.48 7.41 -51.93 -0.38 0.09 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 24 H 0.04 0.68 7.38 -51.93 -0.38 0.29 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.09 1.82 6.85 -51.93 -0.36 1.46 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.26 6.48 -51.93 -0.34 0.93 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -30.05 273.32 -6.56 -36.61 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.35 Total: -3.22 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.44 Total: -19.97 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.61 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.29 Total: -9.79 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.38 Total: 18.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.05 -6.56 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.304 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds