Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99986 * 2 1 4 4 H 1.09001 * 109.47004 * 35.70794 * 3 2 1 5 5 C 1.50696 * 109.46986 * 155.70797 * 3 2 1 6 6 H 1.07997 * 120.00121 * 120.00270 * 5 3 2 7 7 C 1.37879 * 119.99873 * 299.99647 * 5 3 2 8 8 N 1.31510 * 120.00064 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47398 * 89.99681 * 9 7 5 11 11 H 1.48505 * 109.46959 * 209.99536 * 9 7 5 12 12 H 1.48494 * 109.47285 * 329.99452 * 9 7 5 13 13 C 1.52997 * 109.47100 * 275.70687 * 3 2 1 14 14 C 1.53001 * 109.47101 * 174.41543 * 13 3 2 15 15 C 1.53004 * 109.47181 * 174.15058 * 14 13 3 16 16 C 1.53001 * 109.46965 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47231 * 299.99998 * 16 15 14 18 18 C 1.53004 * 109.47144 * 60.00112 * 17 16 15 19 19 C 1.52994 * 109.47388 * 294.15284 * 14 13 3 20 20 H 1.08998 * 109.46949 * 182.08715 * 1 2 3 21 21 H 1.08997 * 109.47376 * 302.08775 * 1 2 3 22 22 H 1.09006 * 109.47262 * 62.08507 * 1 2 3 23 23 H 0.96998 * 120.00563 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.47365 * 54.41979 * 13 3 2 25 25 H 1.08996 * 109.47138 * 294.42293 * 13 3 2 26 26 H 1.09003 * 109.46897 * 54.15346 * 14 13 3 27 27 H 1.08993 * 109.46838 * 60.00191 * 15 14 13 28 28 H 1.09002 * 109.46807 * 300.00209 * 15 14 13 29 29 H 1.09002 * 109.46471 * 179.97438 * 16 15 14 30 30 H 1.08999 * 109.46785 * 60.00111 * 16 15 14 31 31 H 1.08997 * 109.47087 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47153 * 300.00266 * 17 16 15 33 33 H 1.09003 * 109.46970 * 60.00042 * 18 17 16 34 34 H 1.08998 * 109.47187 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47103 * 300.00098 * 19 14 13 36 36 H 1.09006 * 109.47289 * 59.99692 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3957 1.9768 0.5998 5 6 3.3976 1.2377 0.5845 6 1 4.2487 1.5384 -0.0084 7 6 3.5803 0.7917 1.8763 8 7 4.7911 0.7320 2.3863 9 14 2.1083 0.2710 2.9017 10 1 1.8534 -1.1782 2.7016 11 1 2.3879 0.5308 4.3368 12 1 0.9135 1.0463 2.4819 13 6 2.0867 1.8298 -1.4353 14 6 2.5785 3.2785 -1.4236 15 6 2.7943 3.7555 -2.8613 16 6 3.2868 5.2040 -2.8496 17 6 2.2433 6.0919 -2.1688 18 6 2.0275 5.6150 -0.7312 19 6 1.5346 4.1661 -0.7431 20 1 -0.3633 -1.0270 0.0374 21 1 -0.3634 0.5459 0.8706 22 1 -0.3634 0.4811 -0.9081 23 1 4.9198 0.4179 3.2949 24 1 1.0976 1.7856 -1.8915 25 1 2.7795 1.2153 -2.0101 26 1 3.5190 3.3384 -0.8759 27 1 1.8539 3.6955 -3.4090 28 1 3.5381 3.1231 -3.3461 29 1 3.4409 5.5436 -3.8738 30 1 4.2274 5.2635 -2.3020 31 1 2.5943 7.1238 -2.1601 32 1 1.3027 6.0324 -2.7164 33 1 2.9681 5.6745 -0.1836 34 1 1.2844 6.2478 -0.2460 35 1 0.5941 4.1061 -1.2907 36 1 1.3808 3.8263 0.2812 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261305765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = -99.186503 kcal Electronic energy + Delta-G solvation = -15040.596398 eV Core-core repulsion = 12715.689672 eV Total energy + Delta-G solvation = -2324.906726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.97828 -38.43360 -34.85700 -33.76346 -31.57413 -30.12732 -27.18981 -26.76944 -23.72710 -22.95446 -21.22962 -20.58174 -19.09692 -17.24214 -16.77106 -16.05040 -15.95519 -15.24648 -15.16920 -14.88541 -14.78971 -14.54189 -13.65271 -13.35355 -12.98210 -12.93283 -12.80162 -12.41038 -12.26781 -12.17067 -11.92044 -11.81623 -11.59911 -11.25232 -11.10126 -10.93580 -10.83828 -10.66407 -10.04584 -8.33589 -6.43496 1.31595 1.38820 1.46534 2.35917 2.83457 3.60258 3.89449 3.92492 4.01419 4.29762 4.35877 4.49642 4.54086 4.61554 4.65458 4.68211 4.69828 4.73014 4.81877 4.87861 4.92273 4.94247 5.16818 5.20716 5.28331 5.32305 5.40931 5.46756 5.50906 5.59992 5.66390 5.77957 6.26632 6.59234 6.82534 7.29767 8.80238 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.009956 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.734482 B = 2811.733993 C = 3088.121226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.418 6.418 3 C 0.181 3.819 4 H 0.023 0.977 5 C -0.511 4.511 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.250 1.250 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.109 4.109 16 C -0.118 4.118 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.110 4.110 20 H 0.090 0.910 21 H 0.030 0.970 22 H 0.053 0.947 23 H 0.267 0.733 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 8.381 -8.405 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.339 6.339 3 C 0.125 3.875 4 H 0.041 0.959 5 C -0.549 4.549 6 H 0.062 0.938 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.174 1.174 13 C -0.150 4.150 14 C -0.096 4.096 15 C -0.146 4.146 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.148 4.148 20 H 0.108 0.892 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.655 8.185 -8.279 15.124 hybrid contribution -0.064 -0.498 0.873 1.007 sum -9.718 7.686 -7.406 14.435 Atomic orbital electron populations 1.22914 0.82592 1.02745 1.00065 1.88071 1.19149 1.32439 1.94230 1.20266 0.92038 0.81152 0.94001 0.95924 1.21255 0.92615 1.43259 0.97745 0.93755 1.25899 0.98475 0.93880 0.99362 1.70056 1.23361 1.47982 1.16499 0.85576 0.80458 0.79453 0.75876 1.20283 1.22629 1.17379 1.21833 1.00006 0.96258 0.96862 1.20983 0.98672 0.93289 0.96638 1.21556 1.01260 0.96509 0.95286 1.21537 0.98469 0.94584 1.00992 1.21500 0.99440 0.98944 0.94970 1.21547 1.00800 0.95563 0.97775 1.21565 0.98279 0.95173 0.99773 0.89191 0.95156 0.92803 0.92448 0.91845 0.93940 0.93620 0.90999 0.93062 0.90446 0.93447 0.90951 0.90980 0.93654 0.90974 0.91117 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.47 10.36 113.37 1.17 1.64 16 2 O -0.42 -19.75 8.24 -148.98 -1.23 -20.97 16 3 C 0.18 8.67 1.40 29.85 0.04 8.71 16 4 H 0.02 1.10 5.11 -2.39 -0.01 1.09 16 5 C -0.51 -29.95 8.59 25.60 0.22 -29.73 16 6 H 0.04 2.84 7.37 -2.91 -0.02 2.82 16 7 C 0.02 1.38 5.47 84.66 0.46 1.85 16 8 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 9 Si 0.96 47.97 25.75 68.60 1.77 49.73 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.25 -11.44 5.52 99.48 0.55 -10.89 16 13 C -0.11 -4.49 4.36 30.59 0.13 -4.36 16 14 C -0.08 -2.79 2.08 -10.79 -0.02 -2.81 16 15 C -0.11 -3.12 5.20 30.60 0.16 -2.96 16 16 C -0.12 -2.91 5.92 30.59 0.18 -2.73 16 17 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 18 C -0.12 -3.22 5.93 30.61 0.18 -3.04 16 19 C -0.11 -3.52 4.98 30.61 0.15 -3.37 16 20 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 21 H 0.03 1.06 6.95 -2.39 -0.02 1.04 16 22 H 0.05 1.62 7.41 -2.38 -0.02 1.61 16 23 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 24 H 0.06 2.19 7.38 -2.38 -0.02 2.17 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 2.01 6.85 -2.39 -0.02 2.00 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.55 6.48 -2.38 -0.02 1.54 16 Total: -1.00 -66.58 273.32 4.57 -62.01 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.86 Total: 7.85 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 2.87 Total: -39.08 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.23 Total: -20.97 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.77 Total: 49.73 kcal Total: -66.58 4.57 -62.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261305765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.172 kcal (2) G-P(sol) polarization free energy of solvation -66.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds