Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47383 * 2 1 4 4 C 1.53005 * 109.47089 * 239.99968 * 2 1 3 5 5 O 1.42901 * 109.47193 * 120.00284 * 2 1 3 6 6 C 1.42902 * 114.00250 * 66.36377 * 5 2 1 7 7 C 1.50697 * 110.01343 * 306.78338 * 6 5 2 8 8 H 1.07995 * 120.00161 * 115.55151 * 7 6 5 9 9 C 1.37879 * 120.00068 * 295.54593 * 7 6 5 10 10 N 1.31515 * 119.99978 * 3.67362 * 9 7 6 11 11 Si 1.86803 * 120.00004 * 183.67633 * 9 7 6 12 12 H 1.48494 * 109.46847 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47125 * 119.99938 * 11 9 7 14 14 H 1.48500 * 109.46658 * 239.99894 * 11 9 7 15 15 C 1.54262 * 110.03173 * 185.33692 * 6 5 2 16 16 C 1.54888 * 104.20092 * 264.32706 * 15 6 5 17 17 C 1.54898 * 102.74332 * 322.05665 * 16 15 6 18 18 C 1.53876 * 110.03127 * 68.17127 * 6 5 2 19 19 H 1.09006 * 109.47078 * 278.53968 * 1 2 3 20 20 H 1.08994 * 109.47282 * 38.54349 * 1 2 3 21 21 H 1.09003 * 109.46848 * 158.54613 * 1 2 3 22 22 H 1.08999 * 109.47632 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.47243 * 300.00641 * 3 2 1 24 24 H 1.09000 * 109.46920 * 59.99832 * 3 2 1 25 25 H 1.08992 * 109.47225 * 303.15041 * 4 2 1 26 26 H 1.09002 * 109.47066 * 63.14978 * 4 2 1 27 27 H 1.09001 * 109.47303 * 183.14665 * 4 2 1 28 28 H 0.96998 * 120.00014 * 185.00643 * 10 9 7 29 29 H 1.09003 * 110.48205 * 145.64804 * 15 6 5 30 30 H 1.09004 * 110.48913 * 23.00954 * 15 6 5 31 31 H 1.09000 * 110.75867 * 203.74830 * 16 15 6 32 32 H 1.08996 * 110.75520 * 80.36774 * 16 15 6 33 33 H 1.09003 * 110.48148 * 156.61688 * 17 16 15 34 34 H 1.08998 * 110.48909 * 279.13101 * 17 16 15 35 35 H 1.09000 * 110.03454 * 0.02562 * 18 6 5 36 36 H 1.09000 * 110.03384 * 238.56948 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.7066 -2.0707 1.1944 7 6 0.2304 -2.2858 0.9812 8 1 -0.1180 -2.8053 0.1008 9 6 -0.6755 -1.8195 1.9102 10 7 -0.2571 -1.1243 2.9452 11 14 -2.4971 -2.1751 1.6986 12 1 -2.7059 -2.9695 0.4615 13 1 -2.9908 -2.9431 2.8698 14 1 -3.2426 -0.8949 1.5961 15 6 2.1407 -2.6776 2.5446 16 6 3.5479 -3.2608 2.2642 17 6 3.4024 -3.8303 0.8310 18 6 2.5089 -2.8035 0.1049 19 1 -0.3633 0.1526 1.0163 20 1 -0.3633 0.8037 -0.6403 21 1 -0.3633 -0.9565 -0.3759 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9563 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.6313 -1.7313 -1.2780 26 1 1.7234 -0.1759 -2.1384 27 1 3.1285 -0.7704 -1.2216 28 1 -0.8838 -0.8585 3.6362 29 1 1.4533 -3.4680 2.8461 30 1 2.1940 -1.9043 3.3110 31 1 3.7855 -4.0542 2.9728 32 1 4.3040 -2.4762 2.2931 33 1 4.3766 -3.8981 0.3468 34 1 2.9209 -4.8078 0.8560 35 1 3.1271 -2.0937 -0.4447 36 1 1.8305 -3.3156 -0.5776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = -31.666908 kcal Electronic energy + Delta-G solvation = -16026.998406 eV Core-core repulsion = 13705.019550 eV Total energy + Delta-G solvation = -2321.978857 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82074 -35.32360 -32.62225 -31.54780 -28.61375 -27.37089 -26.19312 -25.77323 -23.43714 -19.62031 -19.32660 -18.59459 -16.52063 -14.84378 -14.44765 -14.24241 -14.09778 -13.61007 -12.99951 -12.54616 -12.11275 -11.97725 -11.47845 -11.41685 -11.17121 -11.09912 -10.65117 -10.59193 -10.40841 -10.26178 -10.08294 -9.88111 -9.62113 -9.57995 -9.34825 -8.99256 -8.63406 -8.13457 -7.73024 -5.96355 -3.99172 3.26482 3.36444 3.38682 4.40364 5.10366 5.45283 5.74681 5.82549 5.85773 5.94155 5.99488 6.25855 6.31964 6.43369 6.50045 6.53147 6.64560 6.70830 6.77047 6.79617 6.88102 6.95084 6.99405 7.06955 7.09427 7.21098 7.42062 7.50782 7.62702 7.81168 7.94975 8.03739 8.30163 8.88875 9.22915 9.59881 11.05583 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.017475 C = 0.012767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.730376 B = 1601.885190 C = 2192.581955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.238 3.762 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.083 3.917 10 N -0.854 5.854 11 Si 0.870 3.130 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C -0.076 4.076 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.161 4.161 19 H 0.082 0.918 20 H 0.003 0.997 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.258 0.742 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -0.293 -4.093 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.288 6.288 6 C 0.200 3.800 7 C -0.575 4.575 8 H 0.074 0.926 9 C -0.122 4.122 10 N -0.491 5.491 11 Si 0.697 3.303 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.114 4.114 16 C -0.169 4.169 17 C -0.160 4.160 18 C -0.198 4.198 19 H 0.100 0.900 20 H 0.022 0.978 21 H 0.098 0.902 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.856 -0.050 -3.809 5.420 hybrid contribution -1.267 -0.351 -0.285 1.345 sum 2.589 -0.401 -4.095 4.861 Atomic orbital electron populations 1.22887 0.95829 1.00161 1.03073 1.20759 0.93875 0.90403 0.85770 1.21765 1.00206 0.96308 1.00868 1.23121 0.99761 1.02748 0.98176 1.87881 1.77989 1.23133 1.39803 1.19508 0.92069 0.78273 0.90104 1.21458 0.91157 1.37331 1.07517 0.92624 1.24901 0.97773 0.93697 0.95816 1.70098 1.34349 1.34779 1.09872 0.86917 0.86848 0.78222 0.78265 1.19716 1.20960 1.20832 1.22021 0.92046 0.98860 0.98483 1.22616 0.99685 0.98834 0.95793 1.22333 0.98270 0.98812 0.96571 1.23666 0.98316 0.98110 0.99753 0.89975 0.97764 0.90159 0.93486 0.93049 0.92590 0.90142 0.94492 0.93293 0.93202 0.92112 0.91383 0.93592 0.92718 0.93833 0.92879 0.90915 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 6.88 37.16 0.26 -3.50 16 2 C 0.13 2.89 1.11 -90.62 -0.10 2.79 16 3 C -0.13 -2.56 8.74 37.15 0.32 -2.24 16 4 C -0.18 -3.50 6.71 37.16 0.25 -3.25 16 5 O -0.37 -9.20 9.33 -35.23 -0.33 -9.53 16 6 C 0.24 5.74 0.54 -90.66 -0.05 5.69 16 7 C -0.54 -13.78 4.08 -34.44 -0.14 -13.92 16 8 H 0.06 1.45 7.00 -52.49 -0.37 1.08 16 9 C 0.08 2.16 2.83 -17.82 -0.05 2.11 16 10 N -0.85 -23.34 11.09 55.43 0.61 -22.72 16 11 Si 0.87 20.50 29.29 -169.99 -4.98 15.52 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.08 -1.80 4.95 -25.07 -0.12 -1.93 16 16 C -0.13 -2.60 6.91 -24.73 -0.17 -2.77 16 17 C -0.12 -2.30 6.83 -25.07 -0.17 -2.47 16 18 C -0.16 -3.38 4.11 -25.61 -0.11 -3.48 16 19 H 0.08 2.13 5.51 -51.93 -0.29 1.85 16 20 H 0.00 0.07 7.95 -51.93 -0.41 -0.34 16 21 H 0.08 1.92 5.01 -51.93 -0.26 1.66 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.63 4.45 -51.93 -0.23 1.40 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.90 6.65 -51.93 -0.35 0.55 16 28 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 29 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 30 H 0.07 1.75 7.78 -51.93 -0.40 1.35 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.47 4.36 -51.93 -0.23 1.24 16 36 H 0.05 1.16 6.56 -51.93 -0.34 0.82 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -26.89 261.26 -6.64 -33.52 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.80 Total: 2.24 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.08 Total: -22.97 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.61 Total: -22.72 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.33 Total: -9.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.98 Total: 15.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.89 -6.64 -33.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.856 kcal (2) G-P(sol) polarization free energy of solvation -26.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds