Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46516 * 2 1 4 4 C 1.52997 * 109.47405 * 239.99521 * 2 1 3 5 5 C 1.53001 * 109.47214 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46969 * 60.00200 * 5 4 2 7 7 C 1.53006 * 109.47081 * 300.00068 * 6 5 4 8 8 H 1.08998 * 109.46934 * 299.99495 * 7 6 5 9 9 C 1.53007 * 109.46767 * 179.97438 * 7 6 5 10 10 O 1.42902 * 109.47311 * 65.00025 * 9 7 6 11 11 C 1.42895 * 114.00370 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47139 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.53001 * 109.46891 * 119.99294 * 2 1 3 21 21 H 1.09007 * 109.46756 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47423 * 300.00254 * 1 2 3 23 23 H 1.09006 * 109.47210 * 60.00381 * 1 2 3 24 24 H 1.09006 * 109.46856 * 59.99881 * 4 2 1 25 25 H 1.08998 * 109.47086 * 300.00349 * 4 2 1 26 26 H 1.08997 * 109.47186 * 300.00077 * 5 4 2 27 27 H 1.08994 * 109.47146 * 180.02562 * 5 4 2 28 28 H 1.08999 * 109.47575 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47267 * 59.99927 * 6 5 4 30 30 H 1.09000 * 109.47177 * 304.99621 * 9 7 6 31 31 H 1.09001 * 109.46772 * 184.99676 * 9 7 6 32 32 H 1.09002 * 109.46880 * 59.99856 * 11 10 9 33 33 H 1.08998 * 109.47064 * 300.00681 * 11 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 35 35 H 1.08996 * 109.46945 * 60.00914 * 20 2 1 36 36 H 1.08994 * 109.47753 * 299.99921 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 -0.0001 7 6 3.5704 -0.7202 1.2491 8 1 3.9334 0.3075 1.2488 9 6 4.0804 -1.4415 2.4984 10 8 5.5046 -1.3406 2.5587 11 6 6.0854 -1.9844 3.6945 12 6 7.5824 -1.8165 3.6562 13 1 8.0442 -1.2722 2.8457 14 6 8.3626 -2.3577 4.6559 15 7 7.8004 -3.0209 5.6426 16 14 10.2183 -2.1490 4.6088 17 1 10.5546 -0.7028 4.6345 18 1 10.7538 -2.7596 3.3656 19 1 10.8219 -2.8181 5.7892 20 6 2.0399 -0.7211 1.2494 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.6767 -0.2075 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9330 0.3070 -1.2497 27 1 3.9334 -1.2342 -2.1395 28 1 5.1705 -1.4416 -0.0005 29 1 3.7176 -2.4693 0.0001 30 1 3.7920 -2.4917 2.4548 31 1 3.6458 -0.9819 3.3861 32 1 5.8386 -3.0459 3.6761 33 1 5.6922 -1.5358 4.6068 34 1 6.8367 -3.1290 5.6672 35 1 1.6767 -1.7488 1.2494 36 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300789953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -96.644157 kcal Electronic energy + Delta-G solvation = -14274.032329 eV Core-core repulsion = 11949.235847 eV Total energy + Delta-G solvation = -2324.796482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98128 -36.58265 -33.24253 -32.44916 -31.30730 -26.99964 -26.29839 -24.79595 -22.47387 -21.90010 -20.34756 -19.66037 -16.94350 -15.59314 -15.25788 -14.95727 -14.40300 -14.07059 -13.81872 -13.64016 -13.26907 -12.75872 -12.38974 -12.01165 -11.81188 -11.66452 -11.51859 -11.18580 -10.93111 -10.80617 -10.64291 -10.50522 -10.19344 -10.09404 -9.94262 -9.74003 -8.82028 -8.61352 -8.22310 -6.45480 -4.13867 3.43768 3.46661 3.65471 4.40784 4.58208 4.69387 4.80422 5.04105 5.15885 5.25904 5.32636 5.46394 5.50541 5.56699 5.61557 5.69423 5.72952 5.79779 5.91448 5.94388 6.03591 6.08882 6.12468 6.27796 6.30968 6.33384 6.44000 6.65100 6.67835 6.79842 7.15083 7.91722 8.20198 8.65598 8.82889 9.56972 10.94768 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.005409 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.195606 B = 5175.195952 C = 5466.599924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.083 4.083 8 H 0.074 0.926 9 C 0.065 3.935 10 O -0.386 6.386 11 C 0.186 3.814 12 C -0.596 4.596 13 H 0.060 0.940 14 C 0.017 3.983 15 N -0.911 5.911 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.286 1.286 19 H -0.281 1.281 20 C -0.107 4.107 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.034 0.966 32 H -0.006 1.006 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 4.567 -11.410 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.101 4.101 8 H 0.093 0.907 9 C -0.013 4.013 10 O -0.306 6.306 11 C 0.111 3.889 12 C -0.634 4.634 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.547 5.547 16 Si 0.906 3.094 17 H -0.212 1.212 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.145 4.145 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.065 4.292 -10.733 16.001 hybrid contribution -1.713 0.178 -0.522 1.799 sum -12.778 4.470 -11.255 17.604 Atomic orbital electron populations 1.21834 0.95526 1.01645 1.01380 1.21115 0.95017 0.99724 0.95103 0.91271 1.21601 0.95966 1.00421 0.97075 1.21550 0.95145 1.00873 0.98123 1.21506 1.01668 0.98524 0.93088 1.21110 0.94166 1.00387 0.94471 0.90743 1.22332 0.84610 0.98068 0.96251 1.87861 1.16774 1.77756 1.48173 1.20267 0.94477 0.90837 0.83273 1.21908 0.90411 1.38932 1.12195 0.92168 1.25944 1.07263 0.93320 0.92125 1.70800 1.13203 1.38887 1.31852 0.83403 0.73408 0.76420 0.76143 1.21212 1.21203 1.20626 1.21584 0.94890 1.00634 0.97349 0.92807 0.92797 0.92923 0.92471 0.92163 0.92131 0.92279 0.90774 0.92503 0.94735 0.94769 0.98821 0.98839 0.92333 0.92002 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.98 2.72 -90.62 -0.25 -1.22 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 5 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 6 C -0.11 -1.66 5.10 -26.73 -0.14 -1.80 16 7 C -0.08 -1.29 2.43 -90.59 -0.22 -1.51 16 8 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 9 C 0.07 1.26 5.32 37.16 0.20 1.46 16 10 O -0.39 -9.68 9.86 -35.23 -0.35 -10.03 16 11 C 0.19 5.24 5.00 36.00 0.18 5.42 16 12 C -0.60 -18.16 9.43 -34.44 -0.32 -18.49 16 13 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 15 N -0.91 -28.40 13.65 55.43 0.76 -27.65 16 16 Si 1.08 25.80 29.90 -169.99 -5.08 20.72 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.11 -1.34 4.49 -26.71 -0.12 -1.46 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.29 7.82 -51.93 -0.41 0.89 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H -0.01 -0.17 8.01 -51.93 -0.42 -0.58 16 33 H -0.01 -0.17 8.01 -51.93 -0.42 -0.59 16 34 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -31.72 287.87 -7.72 -39.44 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -6.66 Total: -5.70 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -0.72 Total: -21.12 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.76 Total: -27.65 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.35 Total: -10.03 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.72 -7.72 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300789953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.205 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds