Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46516 * 2 1 4 4 C 1.52997 * 109.47405 * 239.99521 * 2 1 3 5 5 C 1.53001 * 109.47214 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46969 * 60.00200 * 5 4 2 7 7 C 1.53006 * 109.47081 * 300.00068 * 6 5 4 8 8 H 1.08998 * 109.46934 * 299.99495 * 7 6 5 9 9 C 1.53007 * 109.46767 * 179.97438 * 7 6 5 10 10 O 1.42902 * 109.47311 * 65.00025 * 9 7 6 11 11 C 1.42895 * 114.00370 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47139 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00496 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99572 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12 18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12 19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12 20 20 C 1.53001 * 109.46891 * 119.99294 * 2 1 3 21 21 H 1.09007 * 109.46756 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47423 * 300.00254 * 1 2 3 23 23 H 1.09006 * 109.47210 * 60.00381 * 1 2 3 24 24 H 1.09006 * 109.46856 * 59.99881 * 4 2 1 25 25 H 1.08998 * 109.47086 * 300.00349 * 4 2 1 26 26 H 1.08997 * 109.47186 * 300.00077 * 5 4 2 27 27 H 1.08994 * 109.47146 * 180.02562 * 5 4 2 28 28 H 1.08999 * 109.47575 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47267 * 59.99927 * 6 5 4 30 30 H 1.09000 * 109.47177 * 304.99621 * 9 7 6 31 31 H 1.09001 * 109.46772 * 184.99676 * 9 7 6 32 32 H 1.09002 * 109.46880 * 59.99856 * 11 10 9 33 33 H 1.08998 * 109.47064 * 300.00681 * 11 10 9 34 34 H 0.97006 * 119.99995 * 359.97438 * 15 14 12 35 35 H 1.08996 * 109.46945 * 60.00914 * 20 2 1 36 36 H 1.08994 * 109.47753 * 299.99921 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4415 -0.0001 7 6 3.5704 -0.7202 1.2491 8 1 3.9334 0.3075 1.2488 9 6 4.0804 -1.4415 2.4984 10 8 5.5046 -1.3406 2.5587 11 6 6.0854 -1.9844 3.6945 12 6 7.5824 -1.8165 3.6562 13 1 8.0442 -1.2722 2.8457 14 6 8.3626 -2.3577 4.6559 15 7 7.8004 -3.0209 5.6426 16 14 10.2183 -2.1490 4.6088 17 1 10.5546 -0.7028 4.6345 18 1 10.7538 -2.7596 3.3656 19 1 10.8219 -2.8181 5.7892 20 6 2.0399 -0.7211 1.2494 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.6767 -0.2075 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.9330 0.3070 -1.2497 27 1 3.9334 -1.2342 -2.1395 28 1 5.1705 -1.4416 -0.0005 29 1 3.7176 -2.4693 0.0001 30 1 3.7920 -2.4917 2.4548 31 1 3.6458 -0.9819 3.3861 32 1 5.8386 -3.0459 3.6761 33 1 5.6922 -1.5358 4.6068 34 1 6.8367 -3.1290 5.6672 35 1 1.6767 -1.7488 1.2494 36 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300789953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -115.023190 kcal Electronic energy + Delta-G solvation = -14274.829304 eV Core-core repulsion = 11949.235847 eV Total energy + Delta-G solvation = -2325.593457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16487 -38.38603 -35.33538 -33.71725 -32.45994 -29.07089 -27.22453 -26.37302 -24.72109 -22.95062 -21.51375 -20.70713 -19.19765 -17.46498 -16.81248 -16.27415 -15.72235 -15.46656 -15.26274 -15.13926 -14.50680 -14.31568 -13.92277 -13.41237 -13.23707 -13.01596 -12.74001 -12.57251 -12.44881 -12.12499 -11.93284 -11.90588 -11.75015 -11.34845 -11.08000 -10.95794 -10.83045 -10.81540 -10.39060 -8.87102 -6.58362 1.51588 1.60717 1.82199 2.47728 2.96462 3.00435 3.66981 3.78067 3.87121 4.06717 4.24779 4.30573 4.38115 4.46021 4.47343 4.54680 4.61167 4.65799 4.76030 4.82878 4.84355 4.93879 5.01383 5.06899 5.17857 5.23252 5.32012 5.37688 5.43608 5.45347 5.59656 5.64475 5.88771 6.28907 6.62185 7.23112 8.53930 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.064472 B = 0.005409 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.195606 B = 5175.195952 C = 5466.599924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.110 4.110 7 C -0.077 4.077 8 H 0.066 0.934 9 C 0.056 3.944 10 O -0.402 6.402 11 C 0.195 3.805 12 C -0.626 4.626 13 H 0.054 0.946 14 C -0.028 4.028 15 N -0.927 5.927 16 Si 1.129 2.871 17 H -0.267 1.267 18 H -0.266 1.266 19 H -0.275 1.275 20 C -0.101 4.101 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.039 0.961 32 H -0.019 1.019 33 H -0.019 1.019 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.063 5.147 -12.619 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.095 4.095 8 H 0.084 0.916 9 C -0.021 4.021 10 O -0.321 6.321 11 C 0.120 3.880 12 C -0.664 4.664 13 H 0.072 0.928 14 C -0.225 4.225 15 N -0.563 5.563 16 Si 0.948 3.052 17 H -0.191 1.191 18 H -0.191 1.191 19 H -0.199 1.199 20 C -0.139 4.139 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.057 0.943 32 H -0.001 1.001 33 H -0.001 1.001 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.599 4.879 -11.959 17.360 hybrid contribution -1.641 -0.009 -0.149 1.647 sum -13.239 4.870 -12.108 18.590 Atomic orbital electron populations 1.21795 0.93824 1.02151 1.02229 1.21111 0.96366 0.99307 0.93986 0.91351 1.21595 0.94339 1.00960 0.97804 1.21517 0.96590 1.00415 0.96693 1.21481 0.99649 0.99109 0.94546 1.21117 0.96508 0.99196 0.92708 0.91593 1.22711 0.81664 0.99086 0.98663 1.87825 1.20167 1.77375 1.46776 1.19969 0.94061 0.90110 0.83857 1.22271 0.91804 1.39668 1.12624 0.92803 1.27671 1.12070 0.91789 0.91012 1.70928 1.12613 1.39983 1.32776 0.82811 0.67538 0.77722 0.77150 1.19146 1.19142 1.19942 1.21568 0.92012 1.01420 0.98903 0.92476 0.92536 0.91573 0.90447 0.91794 0.92193 0.91202 0.94052 0.92405 0.94385 0.94319 1.00134 1.00118 0.93609 0.91565 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 71.98 0.66 -1.48 16 2 C -0.09 -1.69 2.72 -10.79 -0.03 -1.72 16 3 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.11 -2.01 5.20 30.59 0.16 -1.85 16 5 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 6 C -0.11 -3.31 5.10 30.59 0.16 -3.15 16 7 C -0.08 -2.39 2.43 -10.77 -0.03 -2.41 16 8 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 9 C 0.06 2.20 5.32 71.98 0.38 2.58 16 10 O -0.40 -20.76 9.86 -148.98 -1.47 -22.23 16 11 C 0.20 11.37 5.00 71.23 0.36 11.73 16 12 C -0.63 -38.83 9.43 25.60 0.24 -38.59 16 13 H 0.05 3.33 7.81 -2.91 -0.02 3.31 16 14 C -0.03 -1.67 5.46 84.66 0.46 -1.21 16 15 N -0.93 -58.34 13.65 21.45 0.29 -58.05 16 16 Si 1.13 51.06 29.90 68.60 2.05 53.11 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C -0.10 -2.39 4.49 30.61 0.14 -2.25 16 21 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.48 7.82 -2.39 -0.02 1.47 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 33 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 34 H 0.25 16.23 7.22 -92.70 -0.67 15.56 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.40 287.87 4.66 -63.74 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.10 Total: 4.19 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 2.68 Total: -40.77 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.29 Total: -58.05 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.47 Total: -22.23 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -68.40 4.66 -63.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300789953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.281 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds