Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.49975 * 2 1 4 4 C 1.53037 * 109.49975 * 239.88896 * 2 1 3 5 5 N 1.46855 * 109.52093 * 180.87709 * 4 2 1 6 6 C 1.46843 * 111.19794 * 61.73954 * 5 4 2 7 7 C 1.53037 * 109.52435 * 298.25945 * 6 5 4 8 8 C 1.53113 * 109.27872 * 59.17832 * 7 6 5 9 9 H 1.08996 * 109.57554 * 62.28628 * 8 7 6 10 10 N 1.46904 * 109.52419 * 182.44194 * 8 7 6 11 11 C 1.46899 * 111.00029 * 274.68661 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 H 1.08999 * 109.46902 * 299.91387 * 1 2 3 21 21 H 1.08995 * 109.47299 * 59.92113 * 1 2 3 22 22 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47088 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47395 * 300.08247 * 3 2 1 25 25 H 1.08997 * 109.46969 * 60.08327 * 3 2 1 26 26 H 1.08999 * 109.46242 * 300.88485 * 4 2 1 27 27 H 1.09004 * 109.46753 * 60.86804 * 4 2 1 28 28 H 1.00894 * 110.99565 * 297.63795 * 5 4 2 29 29 H 1.09006 * 109.46564 * 58.27332 * 6 5 4 30 30 H 1.09000 * 109.45879 * 178.24098 * 6 5 4 31 31 H 1.09005 * 109.49855 * 299.24087 * 7 6 5 32 32 H 1.08996 * 109.50687 * 179.12588 * 7 6 5 33 33 H 1.00908 * 110.99583 * 38.63574 * 10 8 7 34 34 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 35 35 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 36 36 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 6 2.0409 -0.7237 -1.2479 5 7 3.5093 -0.7423 -1.2378 6 6 4.0230 -1.4729 -0.0722 7 6 3.5713 -0.7715 1.2108 8 6 2.0414 -0.7234 1.2488 9 1 1.6445 -1.7384 1.2700 10 7 1.6026 0.0003 2.4496 11 6 1.5328 -0.8981 3.6097 12 6 1.0809 -0.1219 4.8197 13 1 0.8673 0.9334 4.7355 14 6 0.9411 -0.7587 6.0346 15 7 1.2016 -2.0437 6.1373 16 14 0.3802 0.2034 7.5344 17 1 -0.9622 0.7835 7.2768 18 1 0.3098 -0.7049 8.7071 19 1 1.3469 1.2961 7.8113 20 1 -0.3633 0.5125 0.8908 21 1 -0.3633 0.5150 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1308 1.4417 -0.0005 24 1 1.6765 1.9568 -0.8892 25 1 1.6789 1.9558 0.8907 26 1 1.6648 -1.7468 -1.2539 27 1 1.6905 -0.2027 -2.1390 28 1 3.8829 0.1943 -1.2711 29 1 3.6376 -2.4924 -0.0837 30 1 5.1121 -1.4961 -0.1093 31 1 3.9678 0.2437 1.2295 32 1 3.9397 -1.3227 2.0760 33 1 2.2052 0.7875 2.6376 34 1 0.8231 -1.7000 3.4061 35 1 2.5180 -1.3243 3.7990 36 1 1.1036 -2.4917 6.9921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300807001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = -16.482596 kcal Electronic energy + Delta-G solvation = -14968.280713 eV Core-core repulsion = 12679.253049 eV Total energy + Delta-G solvation = -2289.027665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.65717 -34.84268 -33.34390 -32.33777 -29.68706 -27.07345 -26.58066 -25.40437 -22.85100 -21.49929 -21.19515 -18.43281 -16.60821 -15.67768 -14.89882 -14.71436 -14.36717 -14.09482 -13.74951 -13.63106 -12.81553 -12.26717 -12.12074 -11.82558 -11.61859 -11.50058 -11.35317 -11.22691 -11.00591 -10.79151 -10.74505 -10.65205 -10.12556 -10.04094 -9.82785 -9.17857 -8.50042 -8.19138 -7.21922 -6.03845 -4.05936 3.32222 3.36244 3.39219 4.41021 4.46853 4.90093 5.06172 5.14842 5.29651 5.32599 5.46530 5.57138 5.63107 5.64654 5.86075 5.96069 6.03140 6.07178 6.11660 6.20146 6.29188 6.34015 6.43772 6.57470 6.72437 6.84589 7.14829 7.26947 7.44092 7.48149 7.78136 8.13407 8.40129 8.62294 9.03400 9.59010 11.07057 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047529 B = 0.007392 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.973717 B = 3786.928664 C = 4031.687617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.066 3.934 5 N -0.687 5.687 6 C 0.060 3.940 7 C -0.187 4.187 8 C 0.099 3.901 9 H 0.069 0.931 10 N -0.679 5.679 11 C 0.196 3.804 12 C -0.515 4.515 13 H 0.060 0.940 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.337 0.663 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.327 0.673 34 H 0.025 0.975 35 H -0.015 1.015 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 3.463 -12.520 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.065 4.065 5 N -0.315 5.315 6 C -0.070 4.070 7 C -0.228 4.228 8 C -0.012 4.012 9 H 0.087 0.913 10 N -0.308 5.308 11 C 0.069 3.931 12 C -0.553 4.553 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.092 0.908 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.043 0.957 35 H 0.003 0.997 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.484 2.687 -12.947 13.454 hybrid contribution 0.492 0.858 1.956 2.192 sum 2.976 3.545 -10.991 11.926 Atomic orbital electron populations 1.21644 0.93916 1.01335 1.01622 1.21227 0.96821 0.95669 0.95384 1.21850 0.99831 0.96026 1.01989 1.22125 0.87336 1.00506 0.96502 1.60746 1.07806 1.21389 1.41603 1.21958 0.99244 0.97982 0.87819 1.23041 0.99187 1.01131 0.99459 1.21505 0.90964 0.97360 0.91376 0.91316 1.60743 1.54530 1.11220 1.04262 1.19542 0.95113 0.91938 0.86468 1.21154 1.45081 0.96032 0.93053 0.92143 1.24986 0.95601 0.94937 0.99018 1.69952 1.49300 1.09041 1.25446 0.86557 0.79302 0.79599 0.81914 1.20175 1.21333 1.20319 0.90777 0.94096 0.93494 0.93589 0.93465 0.91339 0.91243 0.91159 0.84525 0.91148 0.91381 0.92062 0.91387 0.85646 0.95656 0.99731 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.35 37.16 0.31 -1.57 16 2 C -0.09 -1.27 0.59 -154.43 -0.09 -1.36 16 3 C -0.14 -1.84 7.55 37.16 0.28 -1.56 16 4 C 0.07 0.84 5.34 -3.83 -0.02 0.82 16 5 N -0.69 -8.62 6.80 -113.81 -0.77 -9.39 16 6 C 0.06 0.80 6.55 -3.84 -0.03 0.78 16 7 C -0.19 -2.91 4.98 -26.65 -0.13 -3.04 16 8 C 0.10 1.72 1.65 -67.59 -0.11 1.61 16 9 H 0.07 1.33 7.80 -51.93 -0.41 0.92 16 10 N -0.68 -14.12 5.04 -107.86 -0.54 -14.67 16 11 C 0.20 5.10 5.24 -4.98 -0.03 5.08 16 12 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.57 5.13 -51.93 -0.27 0.30 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.01 7.18 -51.93 -0.37 0.64 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.34 3.90 7.15 -39.30 -0.28 3.62 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.92 6.54 -51.93 -0.34 0.58 16 32 H 0.07 1.19 7.54 -51.93 -0.39 0.80 16 33 H 0.33 6.65 7.68 -39.29 -0.30 6.35 16 34 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 35 H -0.02 -0.42 7.51 -51.93 -0.39 -0.81 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 276.39 15.07 4.17 4.17 Total: -1.00 -28.88 276.39 -7.74 -36.62 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.07 Total: 5.37 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.24 Total: -12.66 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.58 Total: -50.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.88 -7.74 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300807001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.136 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds