Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.49975 * 2 1 4 4 C 1.53037 * 109.49975 * 239.88896 * 2 1 3 5 5 N 1.46855 * 109.52093 * 180.87709 * 4 2 1 6 6 C 1.46843 * 111.19794 * 61.73954 * 5 4 2 7 7 C 1.53037 * 109.52435 * 298.25945 * 6 5 4 8 8 C 1.53113 * 109.27872 * 59.17832 * 7 6 5 9 9 H 1.08996 * 109.57554 * 62.28628 * 8 7 6 10 10 N 1.46904 * 109.52419 * 182.44194 * 8 7 6 11 11 C 1.46899 * 111.00029 * 274.68661 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 H 1.08999 * 109.46902 * 299.91387 * 1 2 3 21 21 H 1.08995 * 109.47299 * 59.92113 * 1 2 3 22 22 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47088 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47395 * 300.08247 * 3 2 1 25 25 H 1.08997 * 109.46969 * 60.08327 * 3 2 1 26 26 H 1.08999 * 109.46242 * 300.88485 * 4 2 1 27 27 H 1.09004 * 109.46753 * 60.86804 * 4 2 1 28 28 H 1.00894 * 110.99565 * 297.63795 * 5 4 2 29 29 H 1.09006 * 109.46564 * 58.27332 * 6 5 4 30 30 H 1.09000 * 109.45879 * 178.24098 * 6 5 4 31 31 H 1.09005 * 109.49855 * 299.24087 * 7 6 5 32 32 H 1.08996 * 109.50687 * 179.12588 * 7 6 5 33 33 H 1.00908 * 110.99583 * 38.63574 * 10 8 7 34 34 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 35 35 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 36 36 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 6 2.0409 -0.7237 -1.2479 5 7 3.5093 -0.7423 -1.2378 6 6 4.0230 -1.4729 -0.0722 7 6 3.5713 -0.7715 1.2108 8 6 2.0414 -0.7234 1.2488 9 1 1.6445 -1.7384 1.2700 10 7 1.6026 0.0003 2.4496 11 6 1.5328 -0.8981 3.6097 12 6 1.0809 -0.1219 4.8197 13 1 0.8673 0.9334 4.7355 14 6 0.9411 -0.7587 6.0346 15 7 1.2016 -2.0437 6.1373 16 14 0.3802 0.2034 7.5344 17 1 -0.9622 0.7835 7.2768 18 1 0.3098 -0.7049 8.7071 19 1 1.3469 1.2961 7.8113 20 1 -0.3633 0.5125 0.8908 21 1 -0.3633 0.5150 -0.8892 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1308 1.4417 -0.0005 24 1 1.6765 1.9568 -0.8892 25 1 1.6789 1.9558 0.8907 26 1 1.6648 -1.7468 -1.2539 27 1 1.6905 -0.2027 -2.1390 28 1 3.8829 0.1943 -1.2711 29 1 3.6376 -2.4924 -0.0837 30 1 5.1121 -1.4961 -0.1093 31 1 3.9678 0.2437 1.2295 32 1 3.9397 -1.3227 2.0760 33 1 2.2052 0.7875 2.6376 34 1 0.8231 -1.7000 3.4061 35 1 2.5180 -1.3243 3.7990 36 1 1.1036 -2.4917 6.9921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300807001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = -37.340003 kcal Electronic energy + Delta-G solvation = -14969.185158 eV Core-core repulsion = 12679.253049 eV Total energy + Delta-G solvation = -2289.932110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91472 -36.53292 -34.76856 -34.15392 -31.21985 -28.36985 -28.19498 -26.79085 -24.50674 -22.97472 -22.68661 -19.76163 -18.52265 -17.17602 -16.67206 -15.96684 -15.82389 -15.46395 -15.27028 -14.96905 -14.32748 -13.94760 -13.74340 -13.48374 -12.88851 -12.80164 -12.72934 -12.68223 -12.54506 -12.39125 -12.26975 -12.02796 -11.86661 -11.51931 -11.28007 -11.08588 -10.67836 -9.34958 -8.96298 -8.24491 -6.36302 1.38367 1.42054 1.50100 2.37518 3.08286 3.37382 3.56000 3.75394 3.91966 4.07874 4.19574 4.33510 4.40437 4.49754 4.67624 4.76609 4.85825 4.93047 4.95338 5.03172 5.04402 5.09629 5.15912 5.20900 5.25632 5.40602 5.52404 5.58686 5.62162 6.01077 6.06272 6.45149 6.52832 6.72773 6.88784 7.34971 8.86603 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047529 B = 0.007392 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.973717 B = 3786.928664 C = 4031.687617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.135 4.135 4 C 0.071 3.929 5 N -0.680 5.680 6 C 0.068 3.932 7 C -0.179 4.179 8 C 0.096 3.904 9 H 0.040 0.960 10 N -0.673 5.673 11 C 0.215 3.785 12 C -0.536 4.536 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.347 0.653 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.331 0.669 34 H -0.009 1.009 35 H -0.042 1.042 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 5.086 -13.640 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.193 4.193 4 C -0.059 4.059 5 N -0.308 5.308 6 C -0.063 4.063 7 C -0.220 4.220 8 C -0.015 4.015 9 H 0.058 0.942 10 N -0.302 5.302 11 C 0.087 3.913 12 C -0.574 4.574 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.797 3.203 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.190 1.190 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.167 0.833 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.149 0.851 34 H 0.009 0.991 35 H -0.025 1.025 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.776 4.329 -14.099 15.007 hybrid contribution 0.404 0.319 2.253 2.311 sum 3.179 4.647 -11.846 13.116 Atomic orbital electron populations 1.21612 0.94307 1.00758 1.01609 1.21200 0.96483 0.96476 0.94285 1.21809 1.00454 0.94720 1.02268 1.22110 0.87411 1.00172 0.96233 1.60742 1.07557 1.22050 1.40493 1.21898 1.00360 0.97340 0.86683 1.22944 0.97482 1.01706 0.99869 1.21611 0.92473 0.96071 0.91356 0.94153 1.60636 1.55368 1.10643 1.03533 1.19122 0.92450 0.91583 0.88147 1.21527 1.45386 0.96377 0.94136 0.91821 1.25969 0.95372 0.95933 1.02475 1.70091 1.50109 1.10835 1.26441 0.85386 0.79128 0.78236 0.77550 1.19346 1.20762 1.19044 0.93559 0.91227 0.94424 0.92564 0.91063 0.93190 0.92003 0.88666 0.83341 0.91960 0.89447 0.90922 0.94193 0.85114 0.99102 1.02482 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 8.35 71.98 0.60 -2.99 16 2 C -0.08 -2.24 0.59 -52.13 -0.03 -2.27 16 3 C -0.14 -3.23 7.55 71.98 0.54 -2.69 16 4 C 0.07 1.63 5.34 86.32 0.46 2.09 16 5 N -0.68 -15.10 6.80 -513.99 -3.49 -18.59 16 6 C 0.07 1.71 6.55 86.33 0.57 2.27 16 7 C -0.18 -5.56 4.98 30.64 0.15 -5.40 16 8 C 0.10 3.37 1.65 44.99 0.07 3.45 16 9 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 10 N -0.67 -28.89 5.04 -495.17 -2.50 -31.39 16 11 C 0.21 11.75 5.24 85.56 0.45 12.20 16 12 C -0.54 -31.07 9.32 25.60 0.24 -30.83 16 13 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 16 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H 0.05 1.58 7.68 -2.39 -0.02 1.56 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.22 5.13 -2.38 -0.01 1.21 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.39 7.18 -2.39 -0.02 1.38 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.35 6.74 7.15 -89.70 -0.64 6.10 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.08 6.54 -2.38 -0.02 2.07 16 32 H 0.04 1.45 7.54 -2.39 -0.02 1.43 16 33 H 0.33 13.69 7.68 -89.69 -0.69 13.00 16 34 H -0.01 -0.56 8.06 -2.39 -0.02 -0.57 16 35 H -0.04 -2.51 7.51 -2.39 -0.02 -2.52 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -63.50 276.39 -0.44 -63.93 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.28 Total: 20.06 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.52 Total: -23.66 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -5.70 Total: -107.16 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.50 -0.44 -63.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300807001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds