Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.53893 * 2 1 4 4 C 1.53044 * 109.45321 * 239.86163 * 2 1 3 5 5 N 1.46845 * 109.57984 * 299.18020 * 4 2 1 6 6 C 1.46852 * 111.19769 * 298.28757 * 5 4 2 7 7 C 1.53039 * 109.51932 * 61.73880 * 6 5 4 8 8 C 1.53114 * 109.28264 * 300.82037 * 7 6 5 9 9 H 1.08997 * 109.52595 * 297.69076 * 8 7 6 10 10 N 1.46901 * 109.52598 * 177.56261 * 8 7 6 11 11 C 1.46895 * 110.99820 * 85.12657 * 10 8 7 12 12 C 1.50706 * 109.47182 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09002 * 109.47160 * 299.90221 * 1 2 3 21 21 H 1.08996 * 109.47266 * 59.89996 * 1 2 3 22 22 H 1.09000 * 109.47558 * 179.90342 * 1 2 3 23 23 H 1.08995 * 109.46948 * 180.09525 * 3 2 1 24 24 H 1.09000 * 109.46592 * 300.10045 * 3 2 1 25 25 H 1.08998 * 109.46789 * 60.09980 * 3 2 1 26 26 H 1.08999 * 109.41086 * 179.16155 * 4 2 1 27 27 H 1.09006 * 109.45546 * 59.22309 * 4 2 1 28 28 H 1.00899 * 111.00065 * 62.38159 * 5 4 2 29 29 H 1.09003 * 109.45972 * 301.72693 * 6 5 4 30 30 H 1.08993 * 109.45325 * 181.75302 * 6 5 4 31 31 H 1.09002 * 109.49631 * 180.87828 * 7 6 5 32 32 H 1.08997 * 109.53904 * 60.78885 * 7 6 5 33 33 H 1.00907 * 110.99760 * 321.17455 * 10 8 7 34 34 H 1.09001 * 109.47613 * 60.00522 * 11 10 8 35 35 H 1.09006 * 109.47521 * 300.00140 * 11 10 8 36 36 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0397 -0.7246 -1.2480 5 7 1.5675 -2.1150 -1.2371 6 6 2.0858 -2.8426 -0.0715 7 6 1.5762 -2.1822 1.2116 8 6 2.0412 -0.7239 1.2488 9 1 3.1304 -0.6892 1.2696 10 7 1.5062 -0.0684 2.4497 11 6 2.3750 -0.3056 3.6101 12 6 1.7950 0.3799 4.8204 13 1 0.8728 0.9358 4.7360 14 6 2.4415 0.2974 6.0354 15 7 3.5646 -0.3791 6.1381 16 14 1.7228 1.1477 7.5354 17 1 2.2585 2.5298 7.6251 18 1 0.2435 1.1969 7.4151 19 1 2.0951 0.3922 8.7585 20 1 -0.3633 0.5123 0.8909 21 1 -0.3633 0.5154 -0.8890 22 1 -0.3634 -1.0276 -0.0017 23 1 3.1316 1.4406 -0.0017 24 1 1.6774 1.9566 -0.8891 25 1 1.6804 1.9556 0.8909 26 1 3.1295 -0.7112 -1.2549 27 1 1.6647 -0.2207 -2.1389 28 1 0.5598 -2.1549 -1.2695 29 1 3.1755 -2.8192 -0.0839 30 1 1.7442 -3.8770 -0.1080 31 1 1.9737 -2.7132 2.0766 32 1 0.4870 -2.2176 1.2320 33 1 0.5621 -0.3715 2.6368 34 1 3.3689 0.0936 3.4076 35 1 2.4452 -1.3770 3.7986 36 1 3.9380 -0.8203 5.3590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300807004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -20.142028 kcal Electronic energy + Delta-G solvation = -15004.878442 eV Core-core repulsion = 12715.692092 eV Total energy + Delta-G solvation = -2289.186349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74507 -35.04320 -33.47414 -32.47795 -29.65671 -27.14165 -26.36498 -25.23390 -22.85947 -21.61078 -21.48754 -18.51920 -16.98727 -15.89026 -14.90726 -14.73405 -14.21273 -13.99087 -13.79178 -13.70163 -12.98390 -12.70492 -11.97803 -11.95911 -11.67684 -11.56577 -11.33244 -11.26842 -11.15994 -10.76809 -10.72506 -10.62749 -10.16018 -10.12243 -10.01231 -8.65195 -8.45220 -8.25232 -7.35161 -6.39262 -4.08257 3.42991 3.46316 3.62200 4.38583 4.51417 4.81123 4.96987 5.06436 5.20957 5.37482 5.38954 5.47308 5.54594 5.56389 5.78683 5.87823 5.94991 5.99611 6.03379 6.12092 6.21126 6.25032 6.35241 6.48723 6.63424 6.77155 6.94294 7.08371 7.16461 7.41327 7.78465 8.14244 8.45351 8.56612 8.85690 9.63663 11.00474 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047491 B = 0.007432 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.442073 B = 3766.524900 C = 4011.644621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.127 4.127 4 C 0.065 3.935 5 N -0.687 5.687 6 C 0.061 3.939 7 C -0.188 4.188 8 C 0.098 3.902 9 H 0.067 0.933 10 N -0.672 5.672 11 C 0.185 3.815 12 C -0.595 4.595 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.914 5.914 16 Si 1.075 2.925 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.285 1.285 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.337 0.663 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.329 0.671 34 H 0.016 0.984 35 H -0.025 1.025 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -1.604 -12.918 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.185 4.185 4 C -0.065 4.065 5 N -0.315 5.315 6 C -0.070 4.070 7 C -0.228 4.228 8 C -0.014 4.014 9 H 0.085 0.915 10 N -0.300 5.300 11 C 0.058 3.942 12 C -0.633 4.633 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.551 5.551 16 Si 0.904 3.096 17 H -0.214 1.214 18 H -0.215 1.215 19 H -0.211 1.211 20 H 0.086 0.914 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.034 0.966 35 H -0.008 1.008 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.729 -0.942 -11.863 12.471 hybrid contribution -0.908 -0.876 -0.622 1.406 sum -4.637 -1.818 -12.485 13.442 Atomic orbital electron populations 1.21853 0.95024 1.00793 1.02070 1.21221 0.95869 0.96694 0.95265 1.21642 1.00208 0.94972 1.01706 1.22126 1.00275 0.87572 0.96499 1.60747 1.15275 1.13920 1.41526 1.21956 1.00275 0.96995 0.87744 1.23043 1.01216 0.99101 0.99484 1.21540 0.98753 0.89596 0.91471 0.91454 1.60645 1.05690 1.59937 1.03762 1.19654 0.92861 0.93668 0.87989 1.22030 1.11334 1.35534 0.94441 0.92666 1.25858 0.95257 0.96607 1.01242 1.70766 1.19080 1.31545 1.33664 0.83450 0.75028 0.75985 0.75162 1.21403 1.21499 1.21069 0.91359 0.93332 0.93560 0.93520 0.93953 0.90804 0.91251 0.91034 0.84460 0.91158 0.91279 0.91576 0.91958 0.85342 0.96630 1.00775 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.55 37.16 0.28 -1.57 16 2 C -0.09 -1.26 0.60 -154.42 -0.09 -1.35 16 3 C -0.13 -1.89 8.35 37.16 0.31 -1.58 16 4 C 0.07 0.83 5.34 -3.83 -0.02 0.81 16 5 N -0.69 -8.53 6.80 -113.81 -0.77 -9.30 16 6 C 0.06 0.80 6.55 -3.83 -0.03 0.77 16 7 C -0.19 -2.90 4.98 -26.65 -0.13 -3.04 16 8 C 0.10 1.69 1.65 -67.59 -0.11 1.58 16 9 H 0.07 1.29 7.80 -51.93 -0.41 0.88 16 10 N -0.67 -14.10 5.04 -107.86 -0.54 -14.64 16 11 C 0.19 4.82 4.55 -4.98 -0.02 4.79 16 12 C -0.59 -17.09 9.32 -34.44 -0.32 -17.41 16 13 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 15 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16 16 Si 1.08 25.61 29.90 -169.99 -5.08 20.53 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H 0.07 1.02 7.17 -51.93 -0.37 0.64 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.57 5.13 -51.93 -0.27 0.31 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.34 3.87 7.15 -39.29 -0.28 3.59 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 32 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 33 H 0.33 6.82 7.67 -39.29 -0.30 6.52 16 34 H 0.02 0.44 7.92 -51.93 -0.41 0.03 16 35 H -0.03 -0.69 7.37 -51.93 -0.38 -1.07 16 36 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -29.75 275.07 -7.74 -37.49 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.01 Total: 5.90 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.23 Total: -16.68 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.56 Total: -51.38 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.75 -7.74 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300807004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.352 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds