Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.53893 * 2 1 4 4 C 1.53044 * 109.45321 * 239.86163 * 2 1 3 5 5 N 1.46845 * 109.57984 * 299.18020 * 4 2 1 6 6 C 1.46852 * 111.19769 * 298.28757 * 5 4 2 7 7 C 1.53039 * 109.51932 * 61.73880 * 6 5 4 8 8 C 1.53114 * 109.28264 * 300.82037 * 7 6 5 9 9 H 1.08997 * 109.52595 * 297.69076 * 8 7 6 10 10 N 1.46901 * 109.52598 * 177.56261 * 8 7 6 11 11 C 1.46895 * 110.99820 * 85.12657 * 10 8 7 12 12 C 1.50706 * 109.47182 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09002 * 109.47160 * 299.90221 * 1 2 3 21 21 H 1.08996 * 109.47266 * 59.89996 * 1 2 3 22 22 H 1.09000 * 109.47558 * 179.90342 * 1 2 3 23 23 H 1.08995 * 109.46948 * 180.09525 * 3 2 1 24 24 H 1.09000 * 109.46592 * 300.10045 * 3 2 1 25 25 H 1.08998 * 109.46789 * 60.09980 * 3 2 1 26 26 H 1.08999 * 109.41086 * 179.16155 * 4 2 1 27 27 H 1.09006 * 109.45546 * 59.22309 * 4 2 1 28 28 H 1.00899 * 111.00065 * 62.38159 * 5 4 2 29 29 H 1.09003 * 109.45972 * 301.72693 * 6 5 4 30 30 H 1.08993 * 109.45325 * 181.75302 * 6 5 4 31 31 H 1.09002 * 109.49631 * 180.87828 * 7 6 5 32 32 H 1.08997 * 109.53904 * 60.78885 * 7 6 5 33 33 H 1.00907 * 110.99760 * 321.17455 * 10 8 7 34 34 H 1.09001 * 109.47613 * 60.00522 * 11 10 8 35 35 H 1.09006 * 109.47521 * 300.00140 * 11 10 8 36 36 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0397 -0.7246 -1.2480 5 7 1.5675 -2.1150 -1.2371 6 6 2.0858 -2.8426 -0.0715 7 6 1.5762 -2.1822 1.2116 8 6 2.0412 -0.7239 1.2488 9 1 3.1304 -0.6892 1.2696 10 7 1.5062 -0.0684 2.4497 11 6 2.3750 -0.3056 3.6101 12 6 1.7950 0.3799 4.8204 13 1 0.8728 0.9358 4.7360 14 6 2.4415 0.2974 6.0354 15 7 3.5646 -0.3791 6.1381 16 14 1.7228 1.1477 7.5354 17 1 2.2585 2.5298 7.6251 18 1 0.2435 1.1969 7.4151 19 1 2.0951 0.3922 8.7585 20 1 -0.3633 0.5123 0.8909 21 1 -0.3633 0.5154 -0.8890 22 1 -0.3634 -1.0276 -0.0017 23 1 3.1316 1.4406 -0.0017 24 1 1.6774 1.9566 -0.8891 25 1 1.6804 1.9556 0.8909 26 1 3.1295 -0.7112 -1.2549 27 1 1.6647 -0.2207 -2.1389 28 1 0.5598 -2.1549 -1.2695 29 1 3.1755 -2.8192 -0.0839 30 1 1.7442 -3.8770 -0.1080 31 1 1.9737 -2.7132 2.0766 32 1 0.4870 -2.2176 1.2320 33 1 0.5621 -0.3715 2.6368 34 1 3.3689 0.0936 3.4076 35 1 2.4452 -1.3770 3.7986 36 1 3.9380 -0.8203 5.3590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300807004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -41.799512 kcal Electronic energy + Delta-G solvation = -15005.817581 eV Core-core repulsion = 12715.692092 eV Total energy + Delta-G solvation = -2290.125488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00187 -36.79809 -34.92332 -34.22721 -31.16544 -28.26670 -28.04446 -26.74925 -24.65337 -23.22737 -22.76375 -19.88548 -18.95406 -17.23180 -16.41738 -15.93499 -15.72568 -15.61973 -15.35768 -15.16034 -14.56981 -14.13554 -13.79719 -13.43159 -12.95706 -12.84810 -12.79390 -12.69020 -12.56186 -12.44860 -12.30954 -11.94072 -11.91967 -11.45818 -11.32107 -10.77089 -10.65365 -9.42991 -9.09499 -8.74359 -6.45948 1.50476 1.59846 1.78018 2.52450 3.09719 3.28834 3.44863 3.65963 3.83223 4.00008 4.09864 4.26182 4.32219 4.41817 4.58475 4.67945 4.72946 4.78306 4.86229 4.88573 4.96696 4.98194 5.02618 5.08432 5.14061 5.31232 5.45082 5.52865 5.71064 5.98422 6.00199 6.35492 6.46817 6.52206 6.67022 7.36774 8.64459 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047491 B = 0.007432 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.442073 B = 3766.524900 C = 4011.644621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.125 4.125 4 C 0.071 3.929 5 N -0.679 5.679 6 C 0.068 3.932 7 C -0.179 4.179 8 C 0.094 3.906 9 H 0.040 0.960 10 N -0.667 5.667 11 C 0.201 3.799 12 C -0.610 4.610 13 H 0.055 0.945 14 C -0.038 4.038 15 N -0.936 5.936 16 Si 1.126 2.874 17 H -0.273 1.273 18 H -0.268 1.268 19 H -0.282 1.282 20 H 0.047 0.953 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.348 0.652 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.333 0.667 34 H -0.013 1.013 35 H -0.047 1.047 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -1.328 -14.226 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.183 4.183 4 C -0.059 4.059 5 N -0.308 5.308 6 C -0.062 4.062 7 C -0.220 4.220 8 C -0.016 4.016 9 H 0.059 0.941 10 N -0.296 5.296 11 C 0.072 3.928 12 C -0.648 4.648 13 H 0.073 0.927 14 C -0.236 4.236 15 N -0.574 5.574 16 Si 0.946 3.054 17 H -0.199 1.199 18 H -0.192 1.192 19 H -0.207 1.207 20 H 0.067 0.933 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.167 0.833 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.005 0.995 35 H -0.029 1.029 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.345 -0.674 -13.219 14.274 hybrid contribution -0.390 -0.970 -0.286 1.084 sum -5.735 -1.644 -13.505 14.764 Atomic orbital electron populations 1.21813 0.93623 1.01568 1.02299 1.21203 0.96891 0.96097 0.94218 1.21611 0.99684 0.95357 1.01645 1.22113 1.00004 0.87609 0.96184 1.60745 1.16068 1.13523 1.40424 1.21901 0.99906 0.97880 0.86556 1.22950 1.01642 0.97468 0.99970 1.21656 0.97287 0.91371 0.91332 0.94112 1.60553 1.05060 1.60873 1.03134 1.19290 0.92275 0.91749 0.89440 1.22396 1.11361 1.35466 0.95572 0.92656 1.27504 0.94805 0.96387 1.04854 1.70905 1.20419 1.33011 1.33043 0.82826 0.75547 0.75479 0.71498 1.19853 1.19250 1.20706 0.93342 0.90892 0.92519 0.94394 0.91052 0.93713 0.91950 0.88526 0.83293 0.91878 0.89339 0.94298 0.90926 0.84963 0.99497 1.02938 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 7.55 71.98 0.54 -2.70 16 2 C -0.08 -2.21 0.60 -52.13 -0.03 -2.24 16 3 C -0.13 -3.58 8.35 71.98 0.60 -2.98 16 4 C 0.07 1.61 5.34 86.33 0.46 2.07 16 5 N -0.68 -14.83 6.80 -513.98 -3.49 -18.32 16 6 C 0.07 1.69 6.55 86.33 0.57 2.25 16 7 C -0.18 -5.51 4.98 30.65 0.15 -5.36 16 8 C 0.09 3.30 1.65 45.00 0.07 3.37 16 9 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 10 N -0.67 -28.78 5.04 -495.15 -2.50 -31.28 16 11 C 0.20 10.91 4.55 85.56 0.39 11.30 16 12 C -0.61 -35.75 9.32 25.60 0.24 -35.51 16 13 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 14 C -0.04 -2.26 5.46 84.65 0.46 -1.79 16 15 N -0.94 -59.19 13.65 21.45 0.29 -58.90 16 16 Si 1.13 51.12 29.90 68.60 2.05 53.17 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H 0.05 1.36 7.17 -2.39 -0.02 1.34 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.23 5.13 -2.39 -0.01 1.22 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.53 7.68 -2.39 -0.02 1.52 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.35 6.64 7.15 -89.69 -0.64 6.00 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.39 7.53 -2.39 -0.02 1.38 16 32 H 0.07 2.08 6.55 -2.39 -0.02 2.06 16 33 H 0.33 13.94 7.67 -89.69 -0.69 13.25 16 34 H -0.01 -0.77 7.92 -2.39 -0.02 -0.79 16 35 H -0.05 -2.71 7.37 -2.38 -0.02 -2.73 16 36 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 Total: -1.00 -65.38 275.07 -0.36 -65.74 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.17 Total: 21.17 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.46 Total: -31.59 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.70 Total: -108.50 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -65.38 -0.36 -65.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300807004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.943 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds