Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47336 * 119.99381 * 2 1 3 5 5 H 1.08997 * 109.47147 * 300.00357 * 4 2 1 6 6 C 1.53001 * 109.47336 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46603 * 60.00417 * 4 2 1 8 8 H 1.09010 * 110.33203 * 304.20002 * 7 4 2 9 9 C 1.54484 * 110.46533 * 181.88974 * 7 4 2 10 10 C 1.54678 * 104.07944 * 217.04966 * 9 7 4 11 11 C 1.54478 * 103.97923 * 0.13388 * 10 9 7 12 12 H 1.09000 * 110.37889 * 264.96342 * 11 10 9 13 13 C 1.50706 * 110.37410 * 142.73732 * 11 10 9 14 14 H 1.08005 * 119.99758 * 1.55105 * 13 11 10 15 15 C 1.37871 * 120.00102 * 181.54990 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 O 1.44422 * 104.90266 * 23.85339 * 11 10 9 22 22 H 1.09002 * 109.46966 * 299.99994 * 1 2 3 23 23 H 1.08991 * 109.47322 * 60.00130 * 1 2 3 24 24 H 1.08998 * 109.46913 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47294 * 239.99648 * 2 1 3 26 26 H 1.09003 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46715 * 299.99531 * 3 2 1 28 28 H 1.08997 * 109.47418 * 59.99724 * 3 2 1 29 29 H 1.09002 * 109.46966 * 300.00625 * 6 4 2 30 30 H 1.08998 * 109.46913 * 60.00102 * 6 4 2 31 31 H 1.08991 * 109.47322 * 180.02562 * 6 4 2 32 32 H 1.09001 * 110.50877 * 335.78578 * 9 7 4 33 33 H 1.08998 * 110.51168 * 98.35805 * 9 7 4 34 34 H 1.09003 * 110.61527 * 241.49034 * 10 9 7 35 35 H 1.09000 * 110.49322 * 118.71769 * 10 9 7 36 36 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5701 -0.7217 1.2490 7 6 1.5301 -2.1637 1.2493 8 1 0.4427 -2.1810 1.1744 9 6 1.9930 -2.9002 2.5260 10 6 2.2976 -4.3373 2.0417 11 6 1.9854 -4.2956 0.5294 12 1 0.9685 -4.6404 0.3421 13 6 2.9733 -5.1398 -0.2338 14 1 3.7414 -5.6838 0.2959 15 6 2.8967 -5.2176 -1.6082 16 7 1.9617 -4.5547 -2.2533 17 14 4.1217 -6.2635 -2.5541 18 1 5.3025 -5.4383 -2.9150 19 1 4.5551 -7.4047 -1.7086 20 1 3.4814 -6.7789 -3.7909 21 8 2.1210 -2.9059 0.1604 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.9330 -1.2358 0.3590 30 1 3.9337 0.3058 1.2487 31 1 3.9334 -1.2358 2.1387 32 1 2.8910 -2.4340 2.9314 33 1 1.1981 -2.9083 3.2717 34 1 1.6519 -5.0569 2.5452 35 1 3.3466 -4.5819 2.2085 36 1 1.3259 -4.0114 -1.7620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306164830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -79.906284 kcal Electronic energy + Delta-G solvation = -15211.882168 eV Core-core repulsion = 12887.811494 eV Total energy + Delta-G solvation = -2324.070673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.89413 -36.08778 -32.70091 -31.12012 -30.32485 -27.97897 -26.47409 -24.35644 -22.87189 -21.00425 -19.92550 -18.85268 -17.05770 -15.64116 -14.66766 -14.28389 -14.10864 -13.70059 -13.66423 -13.06403 -12.89904 -12.42517 -11.97792 -11.90195 -11.59441 -11.28764 -10.90637 -10.87773 -10.72498 -10.55396 -10.37630 -10.20820 -10.11658 -10.01862 -9.61983 -9.53205 -8.71390 -8.47125 -8.09623 -6.31973 -4.09301 3.46166 3.49445 3.64799 4.55719 4.93106 5.09246 5.28580 5.31803 5.51700 5.58767 5.67189 5.74309 5.79653 5.89287 5.96879 6.00263 6.10388 6.16197 6.20056 6.27441 6.33885 6.38060 6.53172 6.59277 6.65736 6.70053 6.76207 6.78861 6.89433 7.05190 7.32369 8.10107 8.36384 8.54036 8.92464 9.72359 11.09407 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.009848 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.620705 B = 2842.648757 C = 3179.356699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.073 4.073 5 H 0.064 0.936 6 C -0.143 4.143 7 C 0.068 3.932 8 H 0.050 0.950 9 C -0.154 4.154 10 C -0.138 4.138 11 C 0.188 3.812 12 H 0.014 0.986 13 C -0.603 4.603 14 H 0.055 0.945 15 C 0.031 3.969 16 N -0.893 5.893 17 Si 1.070 2.930 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.284 1.284 21 O -0.358 6.358 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 7.958 6.720 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.091 4.091 5 H 0.082 0.918 6 C -0.200 4.200 7 C 0.009 3.991 8 H 0.068 0.932 9 C -0.191 4.191 10 C -0.176 4.176 11 C 0.133 3.867 12 H 0.032 0.968 13 C -0.640 4.640 14 H 0.073 0.927 15 C -0.177 4.177 16 N -0.528 5.528 17 Si 0.899 3.101 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.210 1.210 21 O -0.278 6.278 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.258 7.556 5.010 9.070 hybrid contribution -0.572 0.422 1.888 2.017 sum -0.829 7.978 6.898 10.579 Atomic orbital electron populations 1.21861 0.95924 1.01922 1.00596 1.21083 0.95227 0.95258 0.99404 1.21891 1.01113 0.96464 1.00796 1.21125 0.96390 0.94413 0.97208 0.91805 1.21813 0.95045 1.00228 1.02919 1.22842 0.96163 0.91850 0.88197 0.93239 1.23064 1.00626 0.97408 0.98047 1.22916 1.01165 0.94479 0.99032 1.20648 0.96172 0.80335 0.89594 0.96844 1.21931 1.18009 1.29871 0.94236 0.92707 1.25840 0.99151 0.97358 0.95370 1.70637 1.15285 1.27003 1.39826 0.83542 0.75339 0.75612 0.75638 1.21375 1.21480 1.20966 1.89436 1.79486 1.19188 1.39669 0.93540 0.93218 0.92179 0.89986 0.92548 0.93251 0.93400 0.91155 0.93594 0.93163 0.91478 0.92669 0.93016 0.91802 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.86 37.16 0.33 -1.87 16 2 C -0.09 -1.49 2.42 -90.62 -0.22 -1.71 16 3 C -0.15 -1.96 8.84 37.16 0.33 -1.63 16 4 C -0.07 -1.23 1.88 -90.62 -0.17 -1.40 16 5 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.14 -2.42 8.42 37.16 0.31 -2.11 16 7 C 0.07 1.36 2.70 -25.95 -0.07 1.29 16 8 H 0.05 0.98 6.28 -51.92 -0.33 0.65 16 9 C -0.15 -2.85 6.47 -25.07 -0.16 -3.01 16 10 C -0.14 -2.99 6.63 -25.07 -0.17 -3.16 16 11 C 0.19 4.93 2.63 -27.10 -0.07 4.86 16 12 H 0.01 0.39 8.00 -51.93 -0.42 -0.03 16 13 C -0.60 -17.48 8.78 -34.44 -0.30 -17.79 16 14 H 0.05 1.57 7.58 -52.48 -0.40 1.17 16 15 C 0.03 0.90 5.42 -17.82 -0.10 0.81 16 16 N -0.89 -27.67 13.57 55.43 0.75 -26.91 16 17 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 O -0.36 -9.06 8.78 -35.23 -0.31 -9.37 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.00 6.35 -51.93 -0.33 0.67 16 25 H 0.08 1.62 7.91 -51.93 -0.41 1.21 16 26 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.41 7.57 -51.93 -0.39 1.02 16 30 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 31 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 32 H 0.07 1.17 5.92 -51.93 -0.31 0.86 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.41 7.71 -51.93 -0.40 1.01 16 36 H 0.28 8.73 6.62 -40.82 -0.27 8.46 16 LS Contribution 276.63 15.07 4.17 4.17 Total: -1.00 -30.59 276.63 -6.76 -37.34 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.00 Total: -0.09 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.29 Total: -25.72 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.75 Total: -26.91 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.31 Total: -9.37 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.59 -6.76 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.566 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds