Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47336 * 119.99381 * 2 1 3 5 5 H 1.08997 * 109.47147 * 300.00357 * 4 2 1 6 6 C 1.53001 * 109.47336 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46603 * 60.00417 * 4 2 1 8 8 H 1.09010 * 110.33203 * 304.20002 * 7 4 2 9 9 C 1.54484 * 110.46533 * 181.88974 * 7 4 2 10 10 C 1.54678 * 104.07944 * 217.04966 * 9 7 4 11 11 C 1.54478 * 103.97923 * 0.13388 * 10 9 7 12 12 H 1.09000 * 110.37889 * 264.96342 * 11 10 9 13 13 C 1.50706 * 110.37410 * 142.73732 * 11 10 9 14 14 H 1.08005 * 119.99758 * 1.55105 * 13 11 10 15 15 C 1.37871 * 120.00102 * 181.54990 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 O 1.44422 * 104.90266 * 23.85339 * 11 10 9 22 22 H 1.09002 * 109.46966 * 299.99994 * 1 2 3 23 23 H 1.08991 * 109.47322 * 60.00130 * 1 2 3 24 24 H 1.08998 * 109.46913 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47294 * 239.99648 * 2 1 3 26 26 H 1.09003 * 109.46938 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46715 * 299.99531 * 3 2 1 28 28 H 1.08997 * 109.47418 * 59.99724 * 3 2 1 29 29 H 1.09002 * 109.46966 * 300.00625 * 6 4 2 30 30 H 1.08998 * 109.46913 * 60.00102 * 6 4 2 31 31 H 1.08991 * 109.47322 * 180.02562 * 6 4 2 32 32 H 1.09001 * 110.50877 * 335.78578 * 9 7 4 33 33 H 1.08998 * 110.51168 * 98.35805 * 9 7 4 34 34 H 1.09003 * 110.61527 * 241.49034 * 10 9 7 35 35 H 1.09000 * 110.49322 * 118.71769 * 10 9 7 36 36 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 3.5701 -0.7217 1.2490 7 6 1.5301 -2.1637 1.2493 8 1 0.4427 -2.1810 1.1744 9 6 1.9930 -2.9002 2.5260 10 6 2.2976 -4.3373 2.0417 11 6 1.9854 -4.2956 0.5294 12 1 0.9685 -4.6404 0.3421 13 6 2.9733 -5.1398 -0.2338 14 1 3.7414 -5.6838 0.2959 15 6 2.8967 -5.2176 -1.6082 16 7 1.9617 -4.5547 -2.2533 17 14 4.1217 -6.2635 -2.5541 18 1 5.3025 -5.4383 -2.9150 19 1 4.5551 -7.4047 -1.7086 20 1 3.4814 -6.7789 -3.7909 21 8 2.1210 -2.9059 0.1604 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.9330 -1.2358 0.3590 30 1 3.9337 0.3058 1.2487 31 1 3.9334 -1.2358 2.1387 32 1 2.8910 -2.4340 2.9314 33 1 1.1981 -2.9083 3.2717 34 1 1.6519 -5.0569 2.5452 35 1 3.3466 -4.5819 2.2085 36 1 1.3259 -4.0114 -1.7620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306164830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -98.069035 kcal Electronic energy + Delta-G solvation = -15212.669764 eV Core-core repulsion = 12887.811494 eV Total energy + Delta-G solvation = -2324.858269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55940 -37.59318 -34.81318 -32.83786 -31.87259 -29.53149 -27.94961 -26.11395 -24.53389 -22.76634 -21.54682 -20.25857 -19.18161 -17.29737 -16.31738 -15.98487 -15.63807 -15.48923 -15.24515 -14.77397 -14.44434 -13.89291 -13.51523 -13.26007 -12.98377 -12.84800 -12.66611 -12.36799 -12.30797 -12.15548 -12.05468 -11.90841 -11.66036 -11.48368 -11.13952 -11.02582 -10.69342 -10.65573 -10.10279 -8.65746 -6.43709 1.50315 1.60060 1.77441 2.55192 3.07214 3.53153 3.72713 3.91354 4.01168 4.12665 4.14873 4.25782 4.35357 4.54437 4.62990 4.68427 4.73944 4.80937 4.83242 4.93100 4.94704 5.01365 5.06315 5.08074 5.11403 5.29891 5.35258 5.36504 5.41530 5.56770 5.66121 5.95445 6.10063 6.48901 6.66855 7.48094 8.74717 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.009848 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.620705 B = 2842.648757 C = 3179.356699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.069 4.069 5 H 0.100 0.900 6 C -0.138 4.138 7 C 0.057 3.943 8 H 0.048 0.952 9 C -0.142 4.142 10 C -0.134 4.134 11 C 0.179 3.821 12 H -0.018 1.018 13 C -0.622 4.622 14 H 0.053 0.947 15 C -0.023 4.023 16 N -0.920 5.920 17 Si 1.119 2.881 18 H -0.276 1.276 19 H -0.266 1.266 20 H -0.280 1.280 21 O -0.386 6.386 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 9.204 8.421 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.195 4.195 4 C -0.087 4.087 5 H 0.118 0.882 6 C -0.195 4.195 7 C -0.001 4.001 8 H 0.066 0.934 9 C -0.180 4.180 10 C -0.172 4.172 11 C 0.123 3.877 12 H 0.000 1.000 13 C -0.659 4.659 14 H 0.072 0.928 15 C -0.224 4.224 16 N -0.556 5.556 17 Si 0.940 3.060 18 H -0.202 1.202 19 H -0.191 1.191 20 H -0.205 1.205 21 O -0.306 6.306 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.257 8.811 6.739 11.095 hybrid contribution -0.787 0.068 1.400 1.607 sum -0.530 8.878 8.138 12.056 Atomic orbital electron populations 1.21826 0.94982 1.00776 1.02351 1.21048 0.96079 0.96805 0.97204 1.21827 1.01090 0.94246 1.02382 1.21181 0.96248 0.92487 0.98773 0.88227 1.21760 0.95145 1.01531 1.01032 1.23185 0.96110 0.93492 0.87341 0.93445 1.23037 1.02446 0.94675 0.97822 1.22820 1.01061 0.97358 0.95913 1.20539 0.93817 0.80857 0.92484 1.00016 1.22351 1.18169 1.30436 0.94917 0.92836 1.27406 1.00044 0.97847 0.97058 1.70771 1.16499 1.28527 1.39758 0.82945 0.73401 0.74879 0.74811 1.20204 1.19084 1.20550 1.89365 1.80105 1.18816 1.42317 0.90708 0.92526 0.94747 0.94851 0.92543 0.92592 0.90899 0.95460 0.90715 0.92507 0.89808 0.89460 0.91510 0.92432 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.86 71.98 0.64 -3.49 16 2 C -0.09 -2.96 2.42 -10.79 -0.03 -2.99 16 3 C -0.14 -3.36 8.84 71.98 0.64 -2.73 16 4 C -0.07 -2.18 1.88 -10.79 -0.02 -2.20 16 5 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 6 C -0.14 -4.45 8.42 71.98 0.61 -3.84 16 7 C 0.06 2.23 2.70 31.10 0.08 2.31 16 8 H 0.05 1.87 6.28 -2.38 -0.01 1.86 16 9 C -0.14 -4.95 6.47 31.67 0.20 -4.75 16 10 C -0.13 -5.72 6.63 31.67 0.21 -5.51 16 11 C 0.18 9.69 2.63 30.35 0.08 9.77 16 12 H -0.02 -1.04 8.00 -2.39 -0.02 -1.06 16 13 C -0.62 -37.01 8.78 25.60 0.22 -36.79 16 14 H 0.05 3.11 7.58 -2.91 -0.02 3.08 16 15 C -0.02 -1.35 5.42 84.65 0.46 -0.89 16 16 N -0.92 -59.28 13.57 21.45 0.29 -58.99 16 17 Si 1.12 52.14 29.90 68.60 2.05 54.20 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 O -0.39 -20.25 8.78 -148.98 -1.31 -21.56 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.03 1.15 6.35 -2.39 -0.02 1.14 16 25 H 0.03 1.37 7.91 -2.39 -0.02 1.35 16 26 H 0.06 1.36 6.43 -2.39 -0.02 1.35 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 30 H 0.07 1.95 6.43 -2.39 -0.02 1.94 16 31 H 0.06 1.73 6.21 -2.39 -0.01 1.72 16 32 H 0.08 2.64 5.92 -2.39 -0.01 2.63 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.50 7.71 -2.39 -0.02 2.48 16 36 H 0.26 17.40 6.62 -92.71 -0.61 16.78 16 Total: -1.00 -69.25 276.63 5.32 -63.94 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.19 Total: 13.51 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.10 Total: -51.10 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.29 Total: -58.99 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -1.31 Total: -21.56 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.20 kcal Total: -69.25 5.32 -63.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.131 kcal (2) G-P(sol) polarization free energy of solvation -69.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds