Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.53007 * 109.47122 * 119.99557 * 2 1 3 5 5 H 1.08995 * 109.46535 * 55.39638 * 4 2 1 6 6 C 1.52996 * 109.47017 * 295.39983 * 4 2 1 7 7 C 1.52991 * 109.47131 * 175.39853 * 4 2 1 8 8 H 1.08996 * 110.33345 * 62.96189 * 7 4 2 9 9 C 1.54479 * 110.37312 * 185.21355 * 7 4 2 10 10 C 1.54504 * 104.18754 * 142.73803 * 9 7 4 11 11 C 1.54792 * 103.91250 * 0.10404 * 10 9 7 12 12 H 1.09001 * 110.43853 * 94.78069 * 11 10 9 13 13 C 1.50699 * 110.40504 * 217.07033 * 11 10 9 14 14 H 1.08004 * 119.99998 * 0.24722 * 13 11 10 15 15 C 1.37879 * 120.00112 * 180.25004 * 13 11 10 16 16 N 1.31515 * 119.99890 * 186.58005 * 15 13 11 17 17 Si 1.86796 * 120.00007 * 6.58211 * 15 13 11 18 18 H 1.48496 * 109.47440 * 94.31447 * 17 15 13 19 19 H 1.48507 * 109.46993 * 214.31378 * 17 15 13 20 20 H 1.48497 * 109.47104 * 334.31405 * 17 15 13 21 21 O 1.44423 * 110.37462 * 300.59139 * 7 4 2 22 22 H 1.09004 * 109.47004 * 65.77481 * 1 2 3 23 23 H 1.08999 * 109.46921 * 185.76776 * 1 2 3 24 24 H 1.08998 * 109.47539 * 305.76873 * 1 2 3 25 25 H 1.09001 * 109.47629 * 239.99672 * 2 1 3 26 26 H 1.08998 * 109.46965 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47169 * 299.99379 * 3 2 1 28 28 H 1.09001 * 109.47179 * 59.99396 * 3 2 1 29 29 H 1.09004 * 109.47502 * 59.99925 * 6 4 2 30 30 H 1.08999 * 109.47519 * 179.97438 * 6 4 2 31 31 H 1.09000 * 109.47152 * 299.99746 * 6 4 2 32 32 H 1.08999 * 110.51137 * 261.45385 * 9 7 4 33 33 H 1.09002 * 110.50890 * 24.02239 * 9 7 4 34 34 H 1.09007 * 110.51091 * 118.71189 * 10 9 7 35 35 H 1.08995 * 110.51585 * 241.42083 * 10 9 7 36 36 H 0.96996 * 120.00272 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6108 -1.7222 1.2915 6 6 1.6266 0.0639 2.4958 7 6 3.5655 -0.8222 1.1928 8 1 4.0116 0.1723 1.2030 9 6 4.0933 -1.6604 2.3783 10 6 5.2711 -2.4621 1.7806 11 6 5.3166 -2.0094 0.3010 12 1 6.0327 -1.1976 0.1732 13 6 5.6746 -3.1689 -0.5924 14 1 5.8523 -4.1449 -0.1654 15 6 5.7754 -2.9838 -1.9550 16 7 5.9595 -4.0174 -2.7472 17 14 5.6505 -1.2651 -2.6759 18 1 7.0126 -0.6972 -2.8408 19 1 4.9781 -1.3307 -3.9985 20 1 4.8613 -0.4011 -1.7617 21 8 3.9781 -1.5487 0.0148 22 1 -0.3633 0.4217 -0.9372 23 1 -0.3633 -1.0225 0.1033 24 1 -0.3634 0.6007 0.8338 25 1 1.8934 -0.5139 -0.8899 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6765 1.9564 0.8899 29 1 0.5397 0.1358 2.5361 30 1 1.9895 -0.4501 3.3859 31 1 2.0557 1.0649 2.4536 32 1 4.4420 -1.0101 3.1805 33 1 3.3188 -2.3346 2.7440 34 1 6.2022 -2.2080 2.2873 35 1 5.0780 -3.5326 1.8486 36 1 6.0301 -3.8873 -3.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306164867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -90.353243 kcal Electronic energy + Delta-G solvation = -15179.093092 eV Core-core repulsion = 12854.569404 eV Total energy + Delta-G solvation = -2324.523687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50339 -37.75597 -34.73421 -32.91278 -31.86835 -29.61141 -28.08232 -26.49414 -24.68573 -22.59074 -21.36233 -19.80965 -19.07099 -17.23662 -16.80694 -16.27635 -16.07067 -15.18238 -14.93516 -14.74535 -14.36089 -13.88179 -13.77874 -13.22562 -13.00361 -12.88502 -12.75260 -12.60139 -12.32892 -12.04589 -11.98529 -11.83618 -11.57041 -11.43709 -11.20526 -11.16346 -10.92409 -10.75890 -10.14477 -8.38374 -6.49497 1.32011 1.35733 1.59187 2.37617 2.87894 3.51159 3.76643 3.96149 4.10775 4.14937 4.22632 4.31370 4.46275 4.55186 4.64320 4.71242 4.76738 4.85154 4.89097 5.01029 5.03301 5.07060 5.11879 5.15345 5.19656 5.24871 5.38996 5.42033 5.42453 5.53644 5.59051 5.70397 6.19394 6.43795 6.69659 7.25899 8.76475 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.011512 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.930904 B = 2431.667239 C = 2956.634292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.075 4.075 5 H 0.058 0.942 6 C -0.140 4.140 7 C 0.061 3.939 8 H 0.060 0.940 9 C -0.137 4.137 10 C -0.137 4.137 11 C 0.167 3.833 12 H 0.024 0.976 13 C -0.530 4.530 14 H 0.039 0.961 15 C 0.027 3.973 16 N -0.938 5.938 17 Si 0.941 3.059 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.229 1.229 21 O -0.396 6.396 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 12.415 10.239 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.094 4.094 5 H 0.076 0.924 6 C -0.197 4.197 7 C 0.003 3.997 8 H 0.078 0.922 9 C -0.174 4.174 10 C -0.175 4.175 11 C 0.111 3.889 12 H 0.042 0.958 13 C -0.567 4.567 14 H 0.057 0.943 15 C -0.173 4.173 16 N -0.578 5.578 17 Si 0.765 3.235 18 H -0.197 1.197 19 H -0.216 1.216 20 H -0.151 1.151 21 O -0.316 6.316 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.400 12.323 9.895 18.388 hybrid contribution 0.517 -0.180 -0.849 1.010 sum -8.882 12.143 9.046 17.555 Atomic orbital electron populations 1.21817 0.93779 1.01712 1.02291 1.21062 0.96611 0.96549 0.97327 1.21889 1.00275 0.95469 1.02453 1.21178 0.92373 0.99458 0.96394 0.92395 1.21851 1.02160 1.00171 0.95483 1.23176 0.95786 0.94971 0.85758 0.92205 1.22929 0.97478 0.98829 0.98179 1.22847 0.99120 0.99902 0.95585 1.20814 0.82114 0.92601 0.93345 0.95842 1.21295 1.47137 0.95912 0.92381 0.94303 1.25946 0.92460 1.01277 0.97575 1.70070 1.50395 1.32599 1.04729 0.85801 0.78737 0.81079 0.77928 1.19742 1.21577 1.15125 1.89340 1.32706 1.71951 1.37641 0.92733 0.93317 0.90634 0.94416 0.94268 0.92778 0.90229 0.90829 0.91909 0.91467 0.88770 0.90865 0.90415 0.93160 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.79 71.98 0.63 -2.57 16 2 C -0.10 -2.85 2.62 -10.79 -0.03 -2.88 16 3 C -0.14 -3.67 8.47 71.98 0.61 -3.06 16 4 C -0.08 -2.20 1.84 -10.80 -0.02 -2.22 16 5 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 6 C -0.14 -2.85 8.30 71.98 0.60 -2.25 16 7 C 0.06 2.14 2.44 31.09 0.08 2.22 16 8 H 0.06 2.00 6.75 -2.39 -0.02 1.99 16 9 C -0.14 -4.33 5.69 31.61 0.18 -4.15 16 10 C -0.14 -5.47 6.64 31.72 0.21 -5.26 16 11 C 0.17 8.25 2.46 30.46 0.07 8.33 16 12 H 0.02 1.16 7.27 -2.39 -0.02 1.14 16 13 C -0.53 -31.98 9.33 25.60 0.24 -31.74 16 14 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 15 C 0.03 1.65 5.47 84.65 0.46 2.11 16 16 N -0.94 -60.69 13.96 21.45 0.30 -60.39 16 17 Si 0.94 47.30 27.00 68.60 1.85 49.15 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.23 -11.05 5.84 99.48 0.58 -10.47 16 21 O -0.40 -18.88 8.21 -148.98 -1.22 -20.10 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.38 6.84 -2.39 -0.02 1.36 16 25 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 26 H 0.04 1.13 6.63 -2.39 -0.02 1.11 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.59 6.35 -2.39 -0.02 1.57 16 29 H 0.07 1.26 6.68 -2.39 -0.02 1.25 16 30 H 0.06 1.18 7.44 -2.39 -0.02 1.16 16 31 H 0.07 1.25 6.35 -2.39 -0.02 1.23 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.19 7.83 -2.39 -0.02 2.18 16 34 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.05 2.16 7.72 -2.39 -0.02 2.14 16 36 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -69.22 273.64 4.86 -64.35 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.90 Total: 8.46 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.03 Total: -41.47 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.30 Total: -60.39 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.22 Total: -20.10 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.85 Total: 49.15 kcal Total: -69.22 4.86 -64.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.001 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds