Wall clock time and date at job start Mon Mar 30 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 C 1.53003 * 109.46862 * 119.99722 * 2 1 3 5 5 H 1.08998 * 109.46995 * 54.82567 * 4 2 1 6 6 C 1.52995 * 109.47199 * 294.82586 * 4 2 1 7 7 C 1.53002 * 109.47188 * 174.82435 * 4 2 1 8 8 H 1.09000 * 109.82202 * 65.93521 * 7 4 2 9 9 C 1.54435 * 109.92847 * 186.84106 * 7 4 2 10 10 C 1.55307 * 102.22967 * 140.87641 * 9 7 4 11 11 C 1.54950 * 100.97753 * 325.91666 * 10 9 7 12 12 H 1.08996 * 110.30902 * 277.50898 * 11 10 9 13 13 C 1.50705 * 110.30752 * 155.43693 * 11 10 9 14 14 H 1.08005 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.37870 * 120.00189 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00371 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 119.99818 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47314 * 90.00112 * 17 15 13 19 19 H 1.48500 * 109.47302 * 210.00046 * 17 15 13 20 20 H 1.48497 * 109.47517 * 329.99902 * 17 15 13 21 21 O 1.43242 * 109.82612 * 305.05372 * 7 4 2 22 22 H 1.08996 * 109.47674 * 305.79787 * 1 2 3 23 23 H 1.09003 * 109.47000 * 65.79126 * 1 2 3 24 24 H 1.08999 * 109.47434 * 185.79207 * 1 2 3 25 25 H 1.08996 * 109.46930 * 239.99898 * 2 1 3 26 26 H 1.09000 * 109.47437 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47183 * 300.00026 * 3 2 1 28 28 H 1.09006 * 109.46863 * 59.99625 * 3 2 1 29 29 H 1.09003 * 109.47290 * 179.97438 * 6 4 2 30 30 H 1.08998 * 109.47132 * 299.99897 * 6 4 2 31 31 H 1.09001 * 109.47453 * 59.99802 * 6 4 2 32 32 H 1.08999 * 110.83430 * 22.70465 * 9 7 4 33 33 H 1.09003 * 110.88046 * 259.07193 * 9 7 4 34 34 H 1.08998 * 111.12240 * 207.98088 * 10 9 7 35 35 H 1.08999 * 111.12430 * 83.85666 * 10 9 7 36 36 H 0.96994 * 120.00380 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6029 -1.7186 1.2969 6 6 1.6389 0.0713 2.4951 7 6 3.5644 -0.8349 1.1860 8 1 4.0118 0.1573 1.2443 9 6 4.0759 -1.7087 2.3522 10 6 5.2104 -2.5268 1.6773 11 6 4.6370 -2.7035 0.2486 12 1 3.9378 -3.5392 0.2223 13 6 5.7533 -2.9251 -0.7393 14 1 6.7788 -2.9422 -0.4006 15 6 5.4655 -3.1072 -2.0753 16 7 6.4396 -3.3011 -2.9373 17 14 3.6920 -3.0785 -2.6609 18 1 3.3130 -1.6893 -3.0241 19 1 3.5488 -3.9573 -3.8494 20 1 2.8040 -3.5659 -1.5751 21 8 3.9537 -1.4725 -0.0362 22 1 -0.3634 0.6011 0.8335 23 1 -0.3633 0.4214 -0.9373 24 1 -0.3634 -1.0224 0.1037 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 2.0018 -0.4428 3.3852 30 1 2.0760 1.0686 2.4475 31 1 0.5528 0.1523 2.5402 32 1 3.2879 -2.3669 2.7181 33 1 4.4706 -1.0893 3.1576 34 1 5.3453 -3.4905 2.1683 35 1 6.1435 -1.9637 1.6592 36 1 6.2371 -3.4296 -3.8772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306164877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:15 Heat of formation + Delta-G solvation = -72.244568 kcal Electronic energy + Delta-G solvation = -15243.305448 eV Core-core repulsion = 12919.567012 eV Total energy + Delta-G solvation = -2323.738436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.06901 -36.33216 -32.53776 -31.43805 -30.34827 -28.06558 -26.96503 -24.92105 -23.23628 -20.60805 -20.26991 -18.37632 -16.79182 -15.81158 -15.38246 -14.93372 -14.27813 -13.86195 -13.22152 -12.79504 -12.71525 -12.48906 -12.24871 -12.15206 -11.85586 -11.59513 -11.25989 -10.90705 -10.88271 -10.66220 -10.48840 -10.43684 -10.06703 -9.84298 -9.62827 -9.56907 -9.39500 -8.58186 -8.13515 -6.07432 -4.15586 3.43633 3.49276 3.58696 4.51780 4.76108 5.02100 5.15728 5.21742 5.41762 5.47908 5.56713 5.64990 5.66353 5.71515 5.85671 5.87982 6.05860 6.09202 6.11712 6.19597 6.21845 6.25551 6.29297 6.44113 6.48693 6.57319 6.65242 6.73159 6.81537 6.89588 7.28327 7.67355 8.40001 8.47521 8.94213 9.56531 11.03293 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.012191 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.498240 B = 2296.261181 C = 2888.932874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.096 4.096 5 H 0.066 0.934 6 C -0.146 4.146 7 C 0.083 3.917 8 H 0.064 0.936 9 C -0.152 4.152 10 C -0.136 4.136 11 C 0.169 3.831 12 H 0.029 0.971 13 C -0.518 4.518 14 H 0.078 0.922 15 C 0.082 3.918 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.266 1.266 21 O -0.381 6.381 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 6.216 9.144 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.115 4.115 5 H 0.085 0.915 6 C -0.204 4.204 7 C 0.025 3.975 8 H 0.082 0.918 9 C -0.190 4.190 10 C -0.174 4.174 11 C 0.114 3.886 12 H 0.047 0.953 13 C -0.555 4.555 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.533 5.533 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.227 1.227 20 H -0.190 1.190 21 O -0.301 6.301 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.285 6.261 8.766 14.894 hybrid contribution -0.797 -0.058 -0.200 0.824 sum -11.082 6.203 8.566 15.319 Atomic orbital electron populations 1.21880 0.96204 1.01212 1.00972 1.21044 0.94460 0.96318 0.99195 1.21892 1.01765 0.96011 1.00649 1.21561 0.96467 0.99023 0.94473 0.91531 1.21879 1.00790 1.00341 0.97342 1.22565 0.92433 0.96368 0.86139 0.91782 1.23162 0.98912 0.98872 0.98020 1.23138 0.97862 0.99155 0.97251 1.21066 0.91418 0.83593 0.92490 0.95318 1.21068 0.93249 1.49302 0.91906 0.90416 1.25057 0.97748 0.92697 0.96672 1.69930 1.32265 1.48095 1.02978 0.86439 0.85125 0.78239 0.77421 1.19857 1.22669 1.19041 1.88588 1.76289 1.38279 1.26983 0.93003 0.93242 0.93097 0.90142 0.92092 0.93461 0.93020 0.92995 0.92433 0.92854 0.91676 0.91665 0.91729 0.91164 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.80 37.16 0.33 -1.61 16 2 C -0.09 -1.47 2.58 -90.62 -0.23 -1.71 16 3 C -0.15 -2.11 8.46 37.16 0.31 -1.80 16 4 C -0.10 -1.53 1.83 -90.62 -0.17 -1.69 16 5 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 6 C -0.15 -1.83 8.30 37.15 0.31 -1.52 16 7 C 0.08 1.54 2.67 -25.98 -0.07 1.47 16 8 H 0.06 1.16 6.89 -51.93 -0.36 0.80 16 9 C -0.15 -2.55 5.67 -24.76 -0.14 -2.69 16 10 C -0.14 -2.75 6.53 -24.48 -0.16 -2.91 16 11 C 0.17 4.17 2.66 -26.85 -0.07 4.10 16 12 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 13 C -0.52 -15.08 9.38 -34.44 -0.32 -15.40 16 14 H 0.08 2.40 8.00 -52.48 -0.42 1.98 16 15 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.89 -27.93 13.96 55.43 0.77 -27.15 16 17 Si 0.90 23.48 26.47 -169.99 -4.50 18.98 16 18 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.27 -6.73 6.48 56.52 0.37 -6.37 16 21 O -0.38 -9.06 7.90 -35.23 -0.28 -9.34 16 22 H 0.05 0.60 6.86 -51.93 -0.36 0.24 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.58 7.40 -51.93 -0.38 1.19 16 26 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 29 H 0.05 0.61 7.47 -51.93 -0.39 0.22 16 30 H 0.06 0.69 6.34 -51.93 -0.33 0.36 16 31 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 32 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -30.79 274.07 -6.34 -37.12 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.15 Total: -2.36 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.31 Total: -21.39 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.15 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.28 Total: -9.34 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.50 Total: 18.98 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.79 -6.34 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.120 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds