Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 C 1.53003 * 109.46862 * 119.99722 * 2 1 3 5 5 H 1.08998 * 109.46995 * 54.82567 * 4 2 1 6 6 C 1.52995 * 109.47199 * 294.82586 * 4 2 1 7 7 C 1.53002 * 109.47188 * 174.82435 * 4 2 1 8 8 H 1.09000 * 109.82202 * 65.93521 * 7 4 2 9 9 C 1.54435 * 109.92847 * 186.84106 * 7 4 2 10 10 C 1.55307 * 102.22967 * 140.87641 * 9 7 4 11 11 C 1.54950 * 100.97753 * 325.91666 * 10 9 7 12 12 H 1.08996 * 110.30902 * 277.50898 * 11 10 9 13 13 C 1.50705 * 110.30752 * 155.43693 * 11 10 9 14 14 H 1.08005 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.37870 * 120.00189 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00371 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 119.99818 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47314 * 90.00112 * 17 15 13 19 19 H 1.48500 * 109.47302 * 210.00046 * 17 15 13 20 20 H 1.48497 * 109.47517 * 329.99902 * 17 15 13 21 21 O 1.43242 * 109.82612 * 305.05372 * 7 4 2 22 22 H 1.08996 * 109.47674 * 305.79787 * 1 2 3 23 23 H 1.09003 * 109.47000 * 65.79126 * 1 2 3 24 24 H 1.08999 * 109.47434 * 185.79207 * 1 2 3 25 25 H 1.08996 * 109.46930 * 239.99898 * 2 1 3 26 26 H 1.09000 * 109.47437 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47183 * 300.00026 * 3 2 1 28 28 H 1.09006 * 109.46863 * 59.99625 * 3 2 1 29 29 H 1.09003 * 109.47290 * 179.97438 * 6 4 2 30 30 H 1.08998 * 109.47132 * 299.99897 * 6 4 2 31 31 H 1.09001 * 109.47453 * 59.99802 * 6 4 2 32 32 H 1.08999 * 110.83430 * 22.70465 * 9 7 4 33 33 H 1.09003 * 110.88046 * 259.07193 * 9 7 4 34 34 H 1.08998 * 111.12240 * 207.98088 * 10 9 7 35 35 H 1.08999 * 111.12430 * 83.85666 * 10 9 7 36 36 H 0.96994 * 120.00380 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6029 -1.7186 1.2969 6 6 1.6389 0.0713 2.4951 7 6 3.5644 -0.8349 1.1860 8 1 4.0118 0.1573 1.2443 9 6 4.0759 -1.7087 2.3522 10 6 5.2104 -2.5268 1.6773 11 6 4.6370 -2.7035 0.2486 12 1 3.9378 -3.5392 0.2223 13 6 5.7533 -2.9251 -0.7393 14 1 6.7788 -2.9422 -0.4006 15 6 5.4655 -3.1072 -2.0753 16 7 6.4396 -3.3011 -2.9373 17 14 3.6920 -3.0785 -2.6609 18 1 3.3130 -1.6893 -3.0241 19 1 3.5488 -3.9573 -3.8494 20 1 2.8040 -3.5659 -1.5751 21 8 3.9537 -1.4725 -0.0362 22 1 -0.3634 0.6011 0.8335 23 1 -0.3633 0.4214 -0.9373 24 1 -0.3634 -1.0224 0.1037 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 2.0018 -0.4428 3.3852 30 1 2.0760 1.0686 2.4475 31 1 0.5528 0.1523 2.5402 32 1 3.2879 -2.3669 2.7181 33 1 4.4706 -1.0893 3.1576 34 1 5.3453 -3.4905 2.1683 35 1 6.1435 -1.9637 1.6592 36 1 6.2371 -3.4296 -3.8772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306164877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -91.278495 kcal Electronic energy + Delta-G solvation = -15244.130821 eV Core-core repulsion = 12919.567012 eV Total energy + Delta-G solvation = -2324.563809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59761 -37.71490 -34.74047 -32.97572 -31.88026 -29.65383 -28.08020 -26.48708 -24.71410 -22.15595 -21.99113 -19.67763 -18.94007 -17.34877 -17.08942 -16.27130 -16.11655 -15.14837 -14.79178 -14.64214 -14.31115 -13.83313 -13.76652 -13.48119 -13.02798 -12.78173 -12.72798 -12.50323 -12.48346 -12.23472 -11.99007 -11.78533 -11.73936 -11.41700 -11.26979 -11.14637 -11.02023 -10.84111 -9.92341 -8.38411 -6.50019 1.30507 1.38493 1.47822 2.33601 2.85443 3.48594 3.79571 3.87015 4.06746 4.08044 4.26287 4.33987 4.49615 4.52756 4.63600 4.68426 4.81402 4.83963 4.86595 4.95411 5.00652 5.06694 5.11353 5.15561 5.19181 5.24431 5.37488 5.42700 5.47885 5.53270 5.59310 5.71823 6.18511 6.50772 6.77210 7.26367 8.76227 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.012191 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.498240 B = 2296.261181 C = 2888.932874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.092 4.092 5 H 0.058 0.942 6 C -0.139 4.139 7 C 0.070 3.930 8 H 0.067 0.933 9 C -0.136 4.136 10 C -0.135 4.135 11 C 0.167 3.833 12 H 0.024 0.976 13 C -0.529 4.529 14 H 0.043 0.957 15 C 0.028 3.972 16 N -0.939 5.939 17 Si 0.961 3.039 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.254 1.254 21 O -0.407 6.407 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 7.212 11.258 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.111 4.111 5 H 0.076 0.924 6 C -0.196 4.196 7 C 0.012 3.988 8 H 0.085 0.915 9 C -0.173 4.173 10 C -0.173 4.173 11 C 0.112 3.888 12 H 0.041 0.959 13 C -0.566 4.566 14 H 0.061 0.939 15 C -0.171 4.171 16 N -0.579 5.579 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.179 1.179 21 O -0.328 6.328 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.781 7.259 10.899 18.299 hybrid contribution 0.051 -0.323 -0.823 0.886 sum -12.730 6.936 10.076 17.655 Atomic orbital electron populations 1.21830 0.93867 1.01726 1.02267 1.21056 0.96492 0.96648 0.97452 1.21863 1.00396 0.95443 1.02231 1.21518 0.94046 0.99327 0.96203 0.92390 1.21839 1.02072 1.00122 0.95601 1.22929 0.94678 0.96310 0.84851 0.91484 1.23134 0.97833 0.98574 0.97805 1.23070 0.98467 1.00655 0.95110 1.20880 0.90199 0.84013 0.93756 0.95861 1.21407 0.93356 1.48737 0.93084 0.93876 1.25869 1.01593 0.92653 0.96992 1.70045 1.34307 1.50072 1.03490 0.85476 0.80538 0.77943 0.77360 1.20379 1.21712 1.17856 1.88486 1.76398 1.37817 1.30127 0.90557 0.92887 0.93233 0.94695 0.94174 0.93081 0.90262 0.91734 0.91682 0.91046 0.89782 0.88493 0.90122 0.92401 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.80 71.98 0.63 -2.66 16 2 C -0.10 -2.96 2.58 -10.79 -0.03 -2.99 16 3 C -0.14 -3.82 8.46 71.98 0.61 -3.21 16 4 C -0.09 -2.66 1.83 -10.79 -0.02 -2.68 16 5 H 0.06 1.77 8.04 -2.39 -0.02 1.75 16 6 C -0.14 -2.83 8.30 71.98 0.60 -2.23 16 7 C 0.07 2.45 2.67 31.08 0.08 2.53 16 8 H 0.07 2.30 6.89 -2.39 -0.02 2.28 16 9 C -0.14 -4.13 5.67 31.87 0.18 -3.95 16 10 C -0.14 -5.29 6.53 32.05 0.21 -5.08 16 11 C 0.17 8.24 2.66 30.52 0.08 8.33 16 12 H 0.02 1.18 7.08 -2.39 -0.02 1.17 16 13 C -0.53 -31.76 9.38 25.60 0.24 -31.52 16 14 H 0.04 2.80 8.00 -2.91 -0.02 2.78 16 15 C 0.03 1.75 5.47 84.65 0.46 2.21 16 16 N -0.94 -60.59 13.96 21.44 0.30 -60.29 16 17 Si 0.96 49.64 26.47 68.60 1.82 51.46 16 18 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.25 -12.52 6.48 99.48 0.65 -11.88 16 21 O -0.41 -19.31 7.90 -148.98 -1.18 -20.49 16 22 H 0.08 1.43 6.86 -2.39 -0.02 1.41 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16 26 H 0.04 1.22 6.71 -2.39 -0.02 1.20 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.67 6.34 -2.38 -0.02 1.65 16 29 H 0.06 1.17 7.47 -2.39 -0.02 1.16 16 30 H 0.06 1.24 6.34 -2.39 -0.02 1.22 16 31 H 0.07 1.23 6.70 -2.39 -0.02 1.21 16 32 H 0.08 2.26 7.78 -2.39 -0.02 2.24 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 36 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -68.87 274.07 4.95 -63.92 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.96 Total: 6.65 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 3.05 Total: -41.25 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.30 Total: -60.29 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.18 Total: -20.49 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.82 Total: 51.46 kcal Total: -68.87 4.95 -63.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.358 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds