Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 7 7 C 1.53007 * 109.87020 * 300.44157 * 6 3 2 8 8 C 1.54100 * 109.87667 * 179.28485 * 6 3 2 9 9 C 1.54804 * 104.18957 * 238.54180 * 8 6 3 10 10 C 1.54997 * 102.09198 * 339.12335 * 9 8 6 11 11 H 1.09002 * 110.61388 * 278.52006 * 10 9 8 12 12 C 1.50700 * 110.75548 * 155.58757 * 10 9 8 13 13 H 1.08002 * 120.00009 * 4.39388 * 12 10 9 14 14 C 1.37874 * 120.00309 * 184.39800 * 12 10 9 15 15 N 1.31512 * 120.00233 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99899 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.46972 * 89.99907 * 16 14 12 18 18 H 1.48497 * 109.47377 * 210.00280 * 16 14 12 19 19 H 1.48503 * 109.46996 * 330.00247 * 16 14 12 20 20 O 1.43743 * 109.88228 * 61.45498 * 6 3 2 21 21 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 23 23 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 24 24 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 25 25 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 26 26 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 27 27 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 28 28 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 29 29 H 1.09005 * 109.46466 * 60.00118 * 7 6 3 30 30 H 1.09000 * 109.47184 * 180.02562 * 7 6 3 31 31 H 1.08991 * 109.47212 * 300.00844 * 7 6 3 32 32 H 1.09001 * 110.48964 * 357.22193 * 8 6 3 33 33 H 1.09003 * 110.48775 * 119.86748 * 8 6 3 34 34 H 1.08999 * 110.91434 * 220.91968 * 9 8 6 35 35 H 1.09008 * 110.93840 * 97.32997 * 9 8 6 36 36 H 0.97003 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 3.9803 0.7521 1.4255 8 6 4.0903 2.8927 0.1087 9 6 5.0583 2.9310 -1.0988 10 6 5.3955 1.4306 -1.2923 11 1 6.1716 1.1184 -0.5936 12 6 5.8209 1.1577 -2.7120 13 1 5.9244 1.9743 -3.4112 14 6 6.0780 -0.1345 -3.1184 15 7 6.4488 -0.3727 -4.3575 16 14 5.8997 -1.5469 -1.9089 17 1 4.5112 -2.0708 -1.9610 18 1 6.8510 -2.6291 -2.2679 19 1 6.1952 -1.0634 -0.5363 20 8 4.1488 0.7646 -0.9983 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.0700 1.5874 -2.1492 27 1 0.5490 2.1252 -1.3970 28 1 1.9982 3.1542 -1.3072 29 1 3.6209 -0.2770 1.4200 30 1 5.0671 0.7573 1.5087 31 1 3.5487 1.2830 2.2739 32 1 3.2694 3.5947 -0.0380 33 1 4.6238 3.1159 1.0326 34 1 5.9548 3.5036 -0.8607 35 1 4.5637 3.3356 -1.9819 36 1 6.6301 -1.2818 -4.6432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306422151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = -68.461258 kcal Electronic energy + Delta-G solvation = -15471.028871 eV Core-core repulsion = 13147.454491 eV Total energy + Delta-G solvation = -2323.574380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35113 -35.38966 -32.53720 -31.35701 -30.44471 -28.98001 -26.93715 -24.08035 -23.30078 -20.76339 -20.07029 -18.74141 -16.88467 -15.44776 -15.08657 -14.58755 -14.03091 -13.86865 -13.29336 -13.12219 -12.62974 -12.48039 -12.36984 -11.84773 -11.49170 -11.41472 -11.18481 -11.13876 -10.87114 -10.60779 -10.41242 -10.34780 -10.14693 -9.76559 -9.58868 -9.50081 -9.32690 -8.59144 -8.31278 -6.07669 -4.15641 3.44108 3.49704 3.59583 4.51871 4.77332 5.08379 5.21087 5.29510 5.41924 5.53665 5.55693 5.74418 5.77758 5.82750 5.94033 5.97525 6.02480 6.13962 6.17905 6.25916 6.29163 6.42004 6.46173 6.51316 6.54314 6.68022 6.73405 6.79872 6.88871 6.98143 7.24685 7.66126 8.30252 8.48066 8.93217 9.55831 11.02900 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.012657 C = 0.011211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.885928 B = 2211.748863 C = 2497.056442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.064 0.936 5 C -0.145 4.145 6 C 0.099 3.901 7 C -0.163 4.163 8 C -0.147 4.147 9 C -0.134 4.134 10 C 0.170 3.830 11 H 0.026 0.974 12 C -0.514 4.514 13 H 0.079 0.921 14 C 0.082 3.918 15 N -0.895 5.895 16 Si 0.902 3.098 17 H -0.274 1.274 18 H -0.301 1.301 19 H -0.267 1.267 20 O -0.365 6.365 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 3.232 10.533 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.202 4.202 6 C 0.058 3.942 7 C -0.221 4.221 8 C -0.185 4.185 9 C -0.172 4.172 10 C 0.115 3.885 11 H 0.044 0.956 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.122 4.122 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.229 1.229 19 H -0.192 1.192 20 O -0.286 6.286 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.518 2.926 10.297 13.681 hybrid contribution 0.028 -0.614 0.676 0.913 sum -8.490 2.312 10.973 14.065 Atomic orbital electron populations 1.21828 0.96716 1.00920 1.01317 1.21582 0.94660 0.96848 1.02716 1.21183 0.93905 0.96192 0.98107 0.91731 1.21840 0.99623 1.00381 0.98357 1.21920 0.92738 0.91282 0.88247 1.22317 1.01488 1.01091 0.97159 1.23025 0.99494 0.96848 0.99143 1.22992 0.97787 0.99754 0.96684 1.21183 0.83239 0.87302 0.96822 0.95639 1.20931 1.45084 0.94677 0.94413 0.90288 1.25042 0.92763 0.99177 0.95192 1.69929 1.45486 1.21070 1.16747 0.86397 0.77842 0.80876 0.81786 1.19982 1.22909 1.19184 1.89047 1.37456 1.55643 1.46408 0.93362 0.93421 0.92609 0.90936 0.92306 0.90990 0.93619 0.93070 0.92261 0.92685 0.92843 0.91429 0.92102 0.92165 0.91252 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.15 0.36 -1.58 16 2 C -0.12 -1.90 4.99 -26.74 -0.13 -2.04 16 3 C -0.08 -1.20 1.73 -90.62 -0.16 -1.36 16 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.14 -2.34 8.52 37.16 0.32 -2.03 16 6 C 0.10 1.80 0.54 -90.04 -0.05 1.75 16 7 C -0.16 -2.71 8.26 37.16 0.31 -2.40 16 8 C -0.15 -2.50 5.78 -25.21 -0.15 -2.64 16 9 C -0.13 -2.71 6.56 -24.73 -0.16 -2.87 16 10 C 0.17 4.13 2.48 -26.83 -0.07 4.06 16 11 H 0.03 0.64 7.34 -51.93 -0.38 0.26 16 12 C -0.51 -14.80 9.42 -34.44 -0.32 -15.12 16 13 H 0.08 2.42 8.03 -52.49 -0.42 2.00 16 14 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 15 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 16 Si 0.90 23.48 26.33 -169.99 -4.48 19.00 16 17 H -0.27 -7.18 7.11 56.52 0.40 -6.77 16 18 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 19 H -0.27 -6.74 6.59 56.52 0.37 -6.37 16 20 O -0.37 -8.51 7.26 -35.23 -0.26 -8.76 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.71 6.57 -51.92 -0.34 0.37 16 24 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 25 H 0.06 0.89 6.20 -51.92 -0.32 0.57 16 26 H 0.07 1.39 7.66 -51.93 -0.40 0.99 16 27 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 28 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 29 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.03 6.19 -51.93 -0.32 0.71 16 33 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.44 8.05 -51.92 -0.42 1.02 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 273.84 15.07 4.13 4.13 Total: -1.00 -30.39 273.84 -6.10 -36.48 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.11 Total: -2.00 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.15 Total: -21.87 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.26 Total: -8.76 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.48 Total: 19.00 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.39 -6.10 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.977 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds