Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 7 7 C 1.53007 * 109.87020 * 300.44157 * 6 3 2 8 8 C 1.54100 * 109.87667 * 179.28485 * 6 3 2 9 9 C 1.54804 * 104.18957 * 238.54180 * 8 6 3 10 10 C 1.54997 * 102.09198 * 339.12335 * 9 8 6 11 11 H 1.09002 * 110.61388 * 278.52006 * 10 9 8 12 12 C 1.50700 * 110.75548 * 155.58757 * 10 9 8 13 13 H 1.08002 * 120.00009 * 4.39388 * 12 10 9 14 14 C 1.37874 * 120.00309 * 184.39800 * 12 10 9 15 15 N 1.31512 * 120.00233 * 179.97438 * 14 12 10 16 16 Si 1.86802 * 119.99899 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.46972 * 89.99907 * 16 14 12 18 18 H 1.48497 * 109.47377 * 210.00280 * 16 14 12 19 19 H 1.48503 * 109.46996 * 330.00247 * 16 14 12 20 20 O 1.43743 * 109.88228 * 61.45498 * 6 3 2 21 21 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 23 23 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 24 24 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 25 25 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 26 26 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 27 27 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 28 28 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 29 29 H 1.09005 * 109.46466 * 60.00118 * 7 6 3 30 30 H 1.09000 * 109.47184 * 180.02562 * 7 6 3 31 31 H 1.08991 * 109.47212 * 300.00844 * 7 6 3 32 32 H 1.09001 * 110.48964 * 357.22193 * 8 6 3 33 33 H 1.09003 * 110.48775 * 119.86748 * 8 6 3 34 34 H 1.08999 * 110.91434 * 220.91968 * 9 8 6 35 35 H 1.09008 * 110.93840 * 97.32997 * 9 8 6 36 36 H 0.97003 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 3.9803 0.7521 1.4255 8 6 4.0903 2.8927 0.1087 9 6 5.0583 2.9310 -1.0988 10 6 5.3955 1.4306 -1.2923 11 1 6.1716 1.1184 -0.5936 12 6 5.8209 1.1577 -2.7120 13 1 5.9244 1.9743 -3.4112 14 6 6.0780 -0.1345 -3.1184 15 7 6.4488 -0.3727 -4.3575 16 14 5.8997 -1.5469 -1.9089 17 1 4.5112 -2.0708 -1.9610 18 1 6.8510 -2.6291 -2.2679 19 1 6.1952 -1.0634 -0.5363 20 8 4.1488 0.7646 -0.9983 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 2.0700 1.5874 -2.1492 27 1 0.5490 2.1252 -1.3970 28 1 1.9982 3.1542 -1.3072 29 1 3.6209 -0.2770 1.4200 30 1 5.0671 0.7573 1.5087 31 1 3.5487 1.2830 2.2739 32 1 3.2694 3.5947 -0.0380 33 1 4.6238 3.1159 1.0326 34 1 5.9548 3.5036 -0.8607 35 1 4.5637 3.3356 -1.9819 36 1 6.6301 -1.2818 -4.6432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306422151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = -87.102135 kcal Electronic energy + Delta-G solvation = -15471.837200 eV Core-core repulsion = 13147.454491 eV Total energy + Delta-G solvation = -2324.382709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87882 -36.82742 -34.67367 -32.90834 -32.02962 -30.21609 -28.77617 -25.32089 -24.97799 -22.29058 -21.68890 -20.14174 -19.04486 -16.99056 -16.92005 -15.97001 -15.62444 -15.43336 -14.79960 -14.58752 -14.43280 -14.05191 -13.75933 -13.38057 -12.92698 -12.73565 -12.67766 -12.54619 -12.38872 -12.23049 -12.11285 -11.87708 -11.62416 -11.50805 -11.18285 -11.05223 -10.98255 -10.80911 -10.06677 -8.37039 -6.48154 1.31887 1.39950 1.49394 2.35000 2.87966 3.49607 3.81371 3.90566 4.12307 4.14856 4.23414 4.35343 4.48149 4.61330 4.67104 4.68402 4.79275 4.79505 4.86426 4.97669 5.03655 5.07174 5.13519 5.17668 5.22330 5.33199 5.34913 5.43355 5.52755 5.56825 5.60910 5.69766 6.20875 6.49621 6.74076 7.27115 8.77519 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.012657 C = 0.011211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.885928 B = 2211.748863 C = 2497.056442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.141 4.141 6 C 0.082 3.918 7 C -0.161 4.161 8 C -0.136 4.136 9 C -0.132 4.132 10 C 0.169 3.831 11 H 0.022 0.978 12 C -0.523 4.523 13 H 0.043 0.957 14 C 0.028 3.972 15 N -0.940 5.940 16 Si 0.963 3.037 17 H -0.279 1.279 18 H -0.295 1.295 19 H -0.253 1.253 20 O -0.390 6.390 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 3.817 13.635 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.091 4.091 4 H 0.119 0.881 5 C -0.198 4.198 6 C 0.042 3.958 7 C -0.218 4.218 8 C -0.173 4.173 9 C -0.170 4.170 10 C 0.113 3.887 11 H 0.039 0.961 12 C -0.560 4.560 13 H 0.061 0.939 14 C -0.171 4.171 15 N -0.580 5.580 16 Si 0.790 3.210 17 H -0.205 1.205 18 H -0.222 1.222 19 H -0.177 1.177 20 O -0.311 6.311 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.117 3.525 13.412 17.166 hybrid contribution 0.490 -0.725 -0.321 0.932 sum -9.627 2.801 13.091 16.489 Atomic orbital electron populations 1.21781 0.94321 1.01753 1.02355 1.21564 0.96796 0.96485 1.01025 1.21249 0.92274 0.96593 0.98978 0.88114 1.21792 1.00912 1.00038 0.97073 1.22377 0.94188 0.91861 0.87368 1.22308 1.00970 1.01226 0.97333 1.23007 0.99446 0.96442 0.98392 1.22907 0.99311 0.96847 0.97958 1.20952 0.83847 0.90239 0.93640 0.96082 1.21248 1.44735 0.93647 0.96361 0.93907 1.25853 0.92739 1.01821 0.96695 1.70048 1.47533 1.21777 1.18629 0.85432 0.77397 0.77918 0.80270 1.20500 1.22193 1.17714 1.88955 1.36727 1.56469 1.48944 0.92793 0.91087 0.92748 0.95020 0.91643 0.95343 0.91285 0.92417 0.92747 0.93826 0.89130 0.89161 0.89563 0.90790 0.92781 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.67 71.98 0.70 -2.57 16 2 C -0.12 -3.55 4.99 30.59 0.15 -3.40 16 3 C -0.07 -2.08 1.73 -10.79 -0.02 -2.09 16 4 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 5 C -0.14 -4.29 8.52 71.98 0.61 -3.68 16 6 C 0.08 2.76 0.54 -10.42 -0.01 2.75 16 7 C -0.16 -4.76 8.26 71.98 0.59 -4.16 16 8 C -0.14 -4.11 5.78 31.58 0.18 -3.93 16 9 C -0.13 -5.19 6.56 31.89 0.21 -4.98 16 10 C 0.17 8.22 2.48 30.53 0.08 8.30 16 11 H 0.02 1.06 7.34 -2.39 -0.02 1.04 16 12 C -0.52 -31.17 9.42 25.60 0.24 -30.93 16 13 H 0.04 2.77 8.03 -2.91 -0.02 2.75 16 14 C 0.03 1.73 5.47 84.65 0.46 2.19 16 15 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 16 Si 0.96 49.46 26.33 68.60 1.81 51.27 16 17 H -0.28 -14.42 7.11 99.48 0.71 -13.72 16 18 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 19 H -0.25 -12.27 6.59 99.48 0.66 -11.61 16 20 O -0.39 -17.98 7.26 -148.98 -1.08 -19.06 16 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.23 6.57 -2.38 -0.02 1.21 16 24 H 0.03 1.17 7.89 -2.39 -0.02 1.15 16 25 H 0.06 1.81 6.20 -2.38 -0.01 1.79 16 26 H 0.03 1.09 7.66 -2.39 -0.02 1.07 16 27 H 0.07 1.74 6.56 -2.39 -0.02 1.73 16 28 H 0.06 1.65 6.37 -2.39 -0.02 1.63 16 29 H 0.05 1.65 6.35 -2.38 -0.02 1.63 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 2.35 6.19 -2.39 -0.01 2.33 16 33 H 0.09 2.21 7.70 -2.39 -0.02 2.20 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 2.25 8.05 -2.38 -0.02 2.23 16 36 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -68.28 273.84 5.20 -63.08 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.98 Total: 7.41 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 3.20 Total: -42.50 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.08 Total: -19.06 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.81 Total: 51.27 kcal Total: -68.28 5.20 -63.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.021 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds