Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46922 * 2 1 4 4 H 1.09004 * 109.46986 * 54.99967 * 3 2 1 5 5 C 1.52994 * 109.47128 * 294.99916 * 3 2 1 6 6 C 1.53000 * 109.47213 * 174.99810 * 3 2 1 7 7 C 1.53001 * 109.82169 * 59.43267 * 6 3 2 8 8 C 1.54374 * 109.83378 * 180.41403 * 6 3 2 9 9 C 1.55307 * 102.25684 * 140.87065 * 8 6 3 10 10 C 1.54948 * 100.94053 * 325.86845 * 9 8 6 11 11 H 1.09002 * 110.38982 * 277.48582 * 10 9 8 12 12 C 1.50694 * 110.30909 * 155.35818 * 10 9 8 13 13 H 1.08000 * 120.00563 * 2.83267 * 12 10 9 14 14 C 1.37885 * 119.99902 * 182.83430 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.43243 * 109.83102 * 298.55061 * 6 3 2 21 21 H 1.08997 * 109.46985 * 59.99703 * 1 2 3 22 22 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47258 * 299.99701 * 1 2 3 24 24 H 1.08996 * 109.47379 * 240.00426 * 2 1 3 25 25 H 1.09000 * 109.46886 * 119.99766 * 2 1 3 26 26 H 1.09002 * 109.47149 * 180.02562 * 5 3 2 27 27 H 1.08994 * 109.47242 * 299.99707 * 5 3 2 28 28 H 1.09004 * 109.47058 * 60.00520 * 5 3 2 29 29 H 1.09001 * 109.47262 * 299.81499 * 7 6 3 30 30 H 1.08999 * 109.47209 * 59.81100 * 7 6 3 31 31 H 1.08994 * 109.47023 * 179.81633 * 7 6 3 32 32 H 1.09000 * 110.84675 * 259.06057 * 8 6 3 33 33 H 1.09005 * 110.84996 * 22.67930 * 8 6 3 34 34 H 1.08991 * 111.12469 * 207.95039 * 9 8 6 35 35 H 1.08998 * 111.12139 * 83.78556 * 9 8 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4445 0.1258 7 6 4.1829 0.6774 -1.0449 8 6 4.0876 2.8969 0.1371 9 6 5.2240 2.8301 1.1935 10 6 4.6436 1.7898 2.1844 11 1 3.9497 2.2690 2.8750 12 6 5.7556 1.1153 2.9455 13 1 6.7798 1.4201 2.7887 14 6 5.4656 0.1088 3.8422 15 7 4.2184 -0.2622 4.0336 16 14 6.8441 -0.7278 4.7852 17 1 7.3342 -1.8971 4.0120 18 1 7.9581 0.2327 4.9895 19 1 6.3358 -1.1841 6.1038 20 8 3.9511 0.8357 1.3635 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9989 3.1541 -1.3075 27 1 2.0699 1.5876 -2.1491 28 1 0.5489 2.1253 -1.3968 29 1 3.8246 -0.3520 -1.0345 30 1 3.8955 1.1526 -1.9828 31 1 5.2688 0.6851 -0.9514 32 1 4.4824 3.1747 -0.8402 33 1 3.3057 3.5883 0.4516 34 1 5.3676 3.7960 1.6776 35 1 6.1531 2.4734 0.7490 36 1 4.0145 -0.9705 4.6642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306422155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = -72.356981 kcal Electronic energy + Delta-G solvation = -15261.992944 eV Core-core repulsion = 12938.249633 eV Total energy + Delta-G solvation = -2323.743311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.01363 -35.35167 -32.49992 -31.16554 -30.19523 -28.19005 -26.50590 -24.43951 -23.32475 -20.77075 -20.05961 -18.07021 -16.43480 -15.34228 -15.09035 -14.48662 -14.33398 -13.57055 -13.17070 -12.56414 -12.35015 -12.15343 -12.10248 -11.78881 -11.55978 -11.30975 -11.08378 -10.97225 -10.85505 -10.53832 -10.36168 -10.31355 -10.10376 -9.89095 -9.52757 -9.41934 -8.98076 -8.49793 -7.76834 -5.94597 -4.07063 3.33907 3.40174 3.42709 4.46682 4.97662 5.24762 5.37615 5.45279 5.61718 5.64438 5.74707 5.84921 5.88386 5.97088 6.01922 6.09644 6.20996 6.26586 6.34216 6.40634 6.46496 6.52705 6.54698 6.68726 6.73864 6.77746 6.87754 6.97069 7.08194 7.16645 7.67236 7.94716 8.34381 8.74060 9.13283 9.63286 11.12663 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.009955 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.838681 B = 2812.108782 C = 3258.689039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.089 4.089 4 H 0.066 0.934 5 C -0.147 4.147 6 C 0.102 3.898 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.148 4.148 10 C 0.212 3.788 11 H 0.024 0.976 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.862 5.862 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.286 1.286 20 O -0.344 6.344 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 3.325 -8.789 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.085 0.915 5 C -0.204 4.204 6 C 0.061 3.939 7 C -0.205 4.205 8 C -0.183 4.183 9 C -0.186 4.186 10 C 0.156 3.844 11 H 0.042 0.958 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.498 5.498 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.212 1.212 20 O -0.264 6.264 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.401 2.997 -8.624 10.135 hybrid contribution 0.730 -0.281 0.452 0.903 sum -3.671 2.716 -8.172 9.361 Atomic orbital electron populations 1.21823 0.97129 1.00712 1.01032 1.21500 0.94284 0.96770 1.02699 1.21412 0.95959 0.96325 0.97115 0.91545 1.21946 1.00464 1.00182 0.97842 1.21823 0.92029 0.91322 0.88706 1.22094 1.00930 1.00636 0.96830 1.23140 0.98684 0.97191 0.99293 1.23317 0.97721 1.00290 0.97247 1.20469 0.90572 0.85608 0.87727 0.95829 1.21120 0.92777 1.21005 1.22251 0.92113 1.25054 0.95254 0.96371 0.96041 1.70044 1.17443 1.28254 1.34076 0.86676 0.82504 0.79986 0.79257 1.20559 1.19837 1.21178 1.88830 1.75653 1.37078 1.24828 0.93385 0.93504 0.93071 0.92752 0.90254 0.93086 0.92790 0.93109 0.92462 0.93146 0.92801 0.92097 0.91936 0.92330 0.91817 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C -0.12 -2.00 4.82 -26.73 -0.13 -2.13 16 3 C -0.09 -1.57 1.81 -90.62 -0.16 -1.74 16 4 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 5 C -0.15 -2.06 8.38 37.15 0.31 -1.75 16 6 C 0.10 2.04 0.68 -89.90 -0.06 1.98 16 7 C -0.15 -2.66 8.02 37.16 0.30 -2.36 16 8 C -0.15 -2.67 5.01 -24.79 -0.12 -2.79 16 9 C -0.15 -3.15 6.53 -24.48 -0.16 -3.31 16 10 C 0.21 5.56 3.27 -26.86 -0.09 5.47 16 11 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.53 -15.26 8.81 -34.44 -0.30 -15.56 16 13 H 0.06 1.69 7.77 -52.49 -0.41 1.28 16 14 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 15 N -0.86 -25.89 12.93 55.43 0.72 -25.18 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 O -0.34 -8.91 9.20 -35.23 -0.32 -9.23 16 21 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.89 6.73 -51.93 -0.35 0.54 16 25 H 0.08 1.67 7.60 -51.93 -0.39 1.28 16 26 H 0.05 0.68 7.06 -51.93 -0.37 0.31 16 27 H 0.05 0.72 6.47 -51.93 -0.34 0.38 16 28 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 29 H 0.06 1.04 6.58 -51.93 -0.34 0.70 16 30 H 0.05 0.76 6.47 -51.93 -0.34 0.42 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 33 H 0.06 1.09 7.57 -51.93 -0.39 0.69 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -30.02 277.81 -6.70 -36.72 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.10 Total: -1.33 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -0.16 Total: -21.85 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.72 Total: -25.18 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.32 Total: -9.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.02 -6.70 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.632 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds