Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46922 * 2 1 4 4 H 1.09004 * 109.46986 * 54.99967 * 3 2 1 5 5 C 1.52994 * 109.47128 * 294.99916 * 3 2 1 6 6 C 1.53000 * 109.47213 * 174.99810 * 3 2 1 7 7 C 1.53001 * 109.82169 * 59.43267 * 6 3 2 8 8 C 1.54374 * 109.83378 * 180.41403 * 6 3 2 9 9 C 1.55307 * 102.25684 * 140.87065 * 8 6 3 10 10 C 1.54948 * 100.94053 * 325.86845 * 9 8 6 11 11 H 1.09002 * 110.38982 * 277.48582 * 10 9 8 12 12 C 1.50694 * 110.30909 * 155.35818 * 10 9 8 13 13 H 1.08000 * 120.00563 * 2.83267 * 12 10 9 14 14 C 1.37885 * 119.99902 * 182.83430 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.43243 * 109.83102 * 298.55061 * 6 3 2 21 21 H 1.08997 * 109.46985 * 59.99703 * 1 2 3 22 22 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47258 * 299.99701 * 1 2 3 24 24 H 1.08996 * 109.47379 * 240.00426 * 2 1 3 25 25 H 1.09000 * 109.46886 * 119.99766 * 2 1 3 26 26 H 1.09002 * 109.47149 * 180.02562 * 5 3 2 27 27 H 1.08994 * 109.47242 * 299.99707 * 5 3 2 28 28 H 1.09004 * 109.47058 * 60.00520 * 5 3 2 29 29 H 1.09001 * 109.47262 * 299.81499 * 7 6 3 30 30 H 1.08999 * 109.47209 * 59.81100 * 7 6 3 31 31 H 1.08994 * 109.47023 * 179.81633 * 7 6 3 32 32 H 1.09000 * 110.84675 * 259.06057 * 8 6 3 33 33 H 1.09005 * 110.84996 * 22.67930 * 8 6 3 34 34 H 1.08991 * 111.12469 * 207.95039 * 9 8 6 35 35 H 1.08998 * 111.12139 * 83.78556 * 9 8 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4445 0.1258 7 6 4.1829 0.6774 -1.0449 8 6 4.0876 2.8969 0.1371 9 6 5.2240 2.8301 1.1935 10 6 4.6436 1.7898 2.1844 11 1 3.9497 2.2690 2.8750 12 6 5.7556 1.1153 2.9455 13 1 6.7798 1.4201 2.7887 14 6 5.4656 0.1088 3.8422 15 7 4.2184 -0.2622 4.0336 16 14 6.8441 -0.7278 4.7852 17 1 7.3342 -1.8971 4.0120 18 1 7.9581 0.2327 4.9895 19 1 6.3358 -1.1841 6.1038 20 8 3.9511 0.8357 1.3635 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.9989 3.1541 -1.3075 27 1 2.0699 1.5876 -2.1491 28 1 0.5489 2.1253 -1.3968 29 1 3.8246 -0.3520 -1.0345 30 1 3.8955 1.1526 -1.9828 31 1 5.2688 0.6851 -0.9514 32 1 4.4824 3.1747 -0.8402 33 1 3.3057 3.5883 0.4516 34 1 5.3676 3.7960 1.6776 35 1 6.1531 2.4734 0.7490 36 1 4.0145 -0.9705 4.6642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306422155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = -90.228319 kcal Electronic energy + Delta-G solvation = -15262.767903 eV Core-core repulsion = 12938.249633 eV Total energy + Delta-G solvation = -2324.518270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65311 -36.92067 -34.57329 -32.84415 -31.85468 -29.51558 -28.38433 -25.81038 -25.05509 -22.47028 -21.71693 -19.59590 -18.56919 -17.01217 -16.74353 -16.42032 -15.70724 -15.26284 -14.64342 -14.20062 -13.93614 -13.73711 -13.62285 -13.40993 -12.89428 -12.82435 -12.72463 -12.47164 -12.41916 -12.28426 -12.07672 -12.01093 -11.69281 -11.34863 -11.20498 -10.92439 -10.88068 -10.63612 -9.67435 -8.12997 -6.33671 1.38532 1.40232 1.50613 2.40486 3.07065 3.58410 3.87428 3.91933 4.17973 4.23345 4.31373 4.44325 4.55682 4.65447 4.70566 4.75757 4.80097 4.86383 4.92083 4.97782 5.09729 5.12825 5.17570 5.19778 5.22389 5.30737 5.40182 5.49040 5.61390 5.66023 5.76132 5.78411 6.21890 6.65249 7.17937 7.42934 8.94624 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.009955 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.838681 B = 2812.108782 C = 3258.689039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.087 4.087 4 H 0.041 0.959 5 C -0.139 4.139 6 C 0.083 3.917 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.141 4.141 10 C 0.204 3.796 11 H -0.016 1.016 12 C -0.557 4.557 13 H 0.062 0.938 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.261 1.261 19 H -0.280 1.280 20 O -0.381 6.381 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 4.000 -10.802 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.106 4.106 4 H 0.060 0.940 5 C -0.196 4.196 6 C 0.043 3.957 7 C -0.199 4.199 8 C -0.170 4.170 9 C -0.179 4.179 10 C 0.148 3.852 11 H 0.002 0.998 12 C -0.594 4.594 13 H 0.081 0.919 14 C -0.179 4.179 15 N -0.538 5.538 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.185 1.185 19 H -0.206 1.206 20 O -0.301 6.301 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.259 3.685 -10.650 12.047 hybrid contribution 0.652 -0.481 1.059 1.333 sum -3.608 3.204 -9.591 10.736 Atomic orbital electron populations 1.21773 0.94724 1.01678 1.01882 1.21433 0.96422 0.96444 1.00706 1.21372 0.94129 0.96442 0.98640 0.94014 1.21887 1.01821 1.00384 0.95460 1.22277 0.93893 0.92444 0.87070 1.22056 0.99904 1.00306 0.97597 1.23116 0.97660 0.96272 0.99986 1.23189 0.98458 0.99239 0.96990 1.20313 0.89524 0.86748 0.88622 0.99827 1.21560 0.93523 1.21305 1.23019 0.91948 1.25948 0.97755 0.97130 0.97110 1.70199 1.19689 1.28951 1.34985 0.85567 0.79464 0.78858 0.77772 1.20194 1.18526 1.20587 1.88743 1.76024 1.38114 1.27201 0.90625 0.92585 0.94021 0.91520 0.95420 0.91944 0.91358 0.91328 0.93371 0.89240 0.94052 0.88634 0.91002 0.90969 0.91911 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.67 71.98 0.70 -3.28 16 2 C -0.11 -3.91 4.82 30.60 0.15 -3.76 16 3 C -0.09 -2.98 1.81 -10.79 -0.02 -3.00 16 4 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.14 -3.35 8.38 71.98 0.60 -2.75 16 6 C 0.08 3.26 0.68 -10.33 -0.01 3.26 16 7 C -0.14 -4.83 8.02 71.98 0.58 -4.25 16 8 C -0.13 -4.61 5.01 31.85 0.16 -4.45 16 9 C -0.14 -5.94 6.53 32.05 0.21 -5.73 16 10 C 0.20 11.09 3.27 30.51 0.10 11.18 16 11 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 12 C -0.56 -32.70 8.81 25.60 0.23 -32.47 16 13 H 0.06 3.52 7.77 -2.91 -0.02 3.50 16 14 C 0.02 1.32 5.42 84.66 0.46 1.78 16 15 N -0.90 -56.37 12.93 21.45 0.28 -56.10 16 16 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 O -0.38 -20.41 9.20 -148.98 -1.37 -21.78 16 21 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.07 2.11 6.73 -2.39 -0.02 2.09 16 25 H 0.03 1.22 7.60 -2.39 -0.02 1.20 16 26 H 0.06 1.39 7.06 -2.39 -0.02 1.37 16 27 H 0.07 1.48 6.47 -2.39 -0.02 1.46 16 28 H 0.07 1.44 6.57 -2.38 -0.02 1.42 16 29 H 0.05 1.70 6.58 -2.39 -0.02 1.69 16 30 H 0.09 2.33 6.47 -2.39 -0.02 2.31 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 2.67 7.82 -2.39 -0.02 2.65 16 33 H 0.07 2.35 7.57 -2.38 -0.02 2.33 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.63 8.05 -2.39 -0.02 2.61 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.05 277.81 5.11 -62.94 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.03 Total: 10.98 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.15 Total: -43.48 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.37 Total: -21.78 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.05 5.11 -62.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.289 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds