Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.52999 * 109.46626 * 294.99833 * 3 2 1 6 6 C 1.52997 * 109.47127 * 175.00294 * 3 2 1 7 7 H 1.09007 * 109.48133 * 305.02319 * 6 3 2 8 8 C 1.53090 * 109.48131 * 184.99565 * 6 3 2 9 9 C 1.53175 * 109.16627 * 182.40476 * 8 6 3 10 10 C 1.53184 * 109.03326 * 56.98295 * 9 8 6 11 11 C 1.53094 * 109.16184 * 303.01793 * 10 9 8 12 12 H 1.09004 * 109.47865 * 177.60003 * 11 10 9 13 13 C 1.50693 * 109.48323 * 297.62659 * 11 10 9 14 14 H 1.08000 * 120.00214 * 0.02562 * 13 11 10 15 15 C 1.37874 * 120.00142 * 180.02562 * 13 11 10 16 16 N 1.31519 * 120.00076 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00335 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46740 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47315 * 119.99833 * 17 15 13 20 20 H 1.48501 * 109.47173 * 240.00461 * 17 15 13 21 21 O 1.42905 * 109.41476 * 57.61244 * 11 10 9 22 22 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 24 24 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 25 25 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 26 26 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 5 3 2 28 28 H 1.08993 * 109.47839 * 299.99931 * 5 3 2 29 29 H 1.09000 * 109.47160 * 60.00369 * 5 3 2 30 30 H 1.08993 * 109.52658 * 302.31809 * 8 6 3 31 31 H 1.09004 * 109.51728 * 62.43723 * 8 6 3 32 32 H 1.08998 * 109.54844 * 176.84623 * 9 8 6 33 33 H 1.09005 * 109.54586 * 297.03162 * 9 8 6 34 34 H 1.08999 * 109.51940 * 62.92590 * 10 9 8 35 35 H 1.08998 * 109.52025 * 183.11281 * 10 9 8 36 36 H 0.96992 * 120.00248 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1256 7 1 3.8573 0.8797 1.0110 8 6 4.0650 2.8858 0.2510 9 6 5.5954 2.8832 0.3159 10 6 6.1470 2.1828 -0.9298 11 6 5.5664 0.7684 -1.0096 12 1 5.9221 0.2801 -1.9169 13 6 6.0071 -0.0244 0.1938 14 1 6.6377 0.4340 0.9411 15 6 5.6053 -1.3351 0.3407 16 7 4.8377 -1.8936 -0.5696 17 14 6.1510 -2.3177 1.8327 18 1 7.0035 -1.4666 2.7011 19 1 4.9575 -2.7644 2.5948 20 1 6.9267 -3.5034 1.3879 21 8 4.1394 0.8415 -1.0356 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9989 3.1540 -1.3076 28 1 2.0698 1.5875 -2.1492 29 1 0.5489 2.1252 -1.3969 30 1 3.7381 3.4615 -0.6148 31 1 3.6618 3.3335 1.1594 32 1 5.9608 3.9096 0.3488 33 1 5.9216 2.3511 1.2095 34 1 5.8621 2.7443 -1.8196 35 1 7.2336 2.1273 -0.8654 36 1 4.5548 -2.8155 -0.4661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306426970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -94.456498 kcal Electronic energy + Delta-G solvation = -15516.711907 eV Core-core repulsion = 13192.010289 eV Total energy + Delta-G solvation = -2324.701618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21988 -36.84588 -34.45628 -33.88365 -31.96075 -29.52911 -27.57588 -26.07868 -24.32779 -23.03703 -20.84693 -20.41550 -18.16467 -16.86576 -16.38480 -16.32159 -15.58562 -15.25386 -15.20555 -14.67842 -13.96332 -13.78820 -13.51628 -13.30435 -12.92836 -12.81813 -12.68458 -12.58344 -12.37523 -12.17400 -11.94458 -11.70047 -11.51177 -11.36661 -11.16402 -10.95346 -10.60137 -10.31959 -9.48773 -8.04816 -6.24505 1.35474 1.38560 1.48146 2.41042 3.17367 3.67291 3.93690 4.14788 4.23709 4.34023 4.38142 4.45222 4.61024 4.71860 4.75386 4.80354 4.89313 4.98058 5.02126 5.10883 5.17102 5.25913 5.28076 5.30818 5.36632 5.43057 5.49645 5.56675 5.64438 5.75460 5.77909 5.92474 6.22423 6.81431 7.27002 7.52697 8.98819 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.014532 C = 0.010523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.470651 B = 1926.385221 C = 2660.088609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.078 4.078 4 H 0.087 0.913 5 C -0.130 4.130 6 C 0.105 3.895 7 H 0.020 0.980 8 C -0.139 4.139 9 C -0.106 4.106 10 C -0.135 4.135 11 C 0.206 3.794 12 H 0.020 0.980 13 C -0.559 4.559 14 H 0.051 0.949 15 C 0.034 3.966 16 N -0.888 5.888 17 Si 0.938 3.062 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.280 1.280 21 O -0.382 6.382 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 7.907 2.123 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.097 4.097 4 H 0.105 0.895 5 C -0.187 4.187 6 C 0.047 3.953 7 H 0.038 0.962 8 C -0.177 4.177 9 C -0.144 4.144 10 C -0.173 4.173 11 C 0.149 3.851 12 H 0.037 0.963 13 C -0.597 4.597 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.525 5.525 17 Si 0.764 3.236 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.206 1.206 21 O -0.301 6.301 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.087 7.685 1.905 9.987 hybrid contribution 0.843 -1.068 0.827 1.592 sum -5.244 6.616 2.731 8.874 Atomic orbital electron populations 1.21776 0.94137 1.01515 1.02405 1.21305 0.96341 0.96475 1.00165 1.21185 0.93056 0.96079 0.99343 0.89520 1.21696 1.00813 0.99795 0.96410 1.21697 0.92539 0.91624 0.89462 0.96169 1.22165 0.95950 0.97458 1.02107 1.21418 0.95811 0.99442 0.97692 1.22054 0.99723 0.97669 0.97864 1.19546 0.79428 0.90948 0.95130 0.96250 1.21782 1.32281 0.97292 1.08371 0.93035 1.25668 0.94488 0.98552 0.98139 1.70188 1.34453 1.12907 1.34982 0.85838 0.78138 0.79017 0.80647 1.19145 1.20874 1.20612 1.87827 1.21640 1.81069 1.39566 0.93187 0.91690 0.91661 0.94337 0.95254 0.92132 0.94483 0.91377 0.91188 0.90613 0.91044 0.93362 0.92945 0.92612 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.67 71.98 0.70 -3.33 16 2 C -0.11 -4.03 5.25 30.60 0.16 -3.87 16 3 C -0.08 -2.78 2.22 -10.79 -0.02 -2.81 16 4 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 5 C -0.13 -4.10 8.51 71.98 0.61 -3.49 16 6 C 0.11 4.51 2.05 30.62 0.06 4.57 16 7 H 0.02 1.02 7.09 -2.38 -0.02 1.00 16 8 C -0.14 -4.92 5.22 30.68 0.16 -4.76 16 9 C -0.11 -3.94 5.77 30.71 0.18 -3.76 16 10 C -0.14 -5.69 5.59 30.69 0.17 -5.52 16 11 C 0.21 10.71 3.16 29.88 0.09 10.81 16 12 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 13 C -0.56 -30.84 6.59 25.60 0.17 -30.68 16 14 H 0.05 2.81 6.87 -2.91 -0.02 2.79 16 15 C 0.03 1.91 5.40 84.65 0.46 2.37 16 16 N -0.89 -52.53 12.84 21.45 0.28 -52.25 16 17 Si 0.94 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 O -0.38 -19.39 8.39 -148.98 -1.25 -20.64 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.06 1.68 6.56 -2.39 -0.02 1.66 16 25 H 0.04 1.76 7.96 -2.39 -0.02 1.74 16 26 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 1.72 6.52 -2.39 -0.02 1.71 16 28 H 0.04 1.37 7.56 -2.39 -0.02 1.35 16 29 H 0.07 1.78 6.56 -2.39 -0.02 1.76 16 30 H 0.07 2.30 6.46 -2.39 -0.02 2.29 16 31 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.96 6.86 -2.38 -0.02 1.94 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -61.63 275.55 4.81 -56.82 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.02 Total: 10.37 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 2.74 Total: -40.48 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.28 Total: -52.25 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.25 Total: -20.64 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.63 4.81 -56.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306426970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.635 kcal (2) G-P(sol) polarization free energy of solvation -61.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds