Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47645 * 2 1 4 4 H 1.09001 * 109.47362 * 54.99090 * 3 2 1 5 5 C 1.53006 * 109.46623 * 294.99642 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46991 * 60.00378 * 6 5 3 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 5 9 9 C 1.52997 * 109.47317 * 174.99822 * 3 2 1 10 10 H 1.08996 * 109.46952 * 59.99813 * 9 3 2 11 11 C 1.52996 * 109.47131 * 299.99507 * 9 3 2 12 12 H 1.09001 * 109.46997 * 60.00426 * 11 9 3 13 13 O 1.42898 * 109.47379 * 300.00404 * 11 9 3 14 14 C 1.50698 * 109.47188 * 179.97438 * 11 9 3 15 15 H 1.07998 * 120.00218 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00346 * 180.02562 * 16 14 11 18 18 Si 1.86806 * 120.00142 * 0.02562 * 16 14 11 19 19 H 1.48507 * 109.47041 * 89.99719 * 18 16 14 20 20 H 1.48493 * 109.47237 * 209.99491 * 18 16 14 21 21 H 1.48500 * 109.47007 * 329.99830 * 18 16 14 22 22 H 1.08993 * 109.47092 * 300.00720 * 1 2 3 23 23 H 1.09006 * 109.46455 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47430 * 239.99253 * 2 1 3 26 26 H 1.09007 * 109.46700 * 119.99507 * 2 1 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 29 29 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 6 5 3 31 31 H 1.09001 * 109.47289 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47611 * 59.99933 * 7 6 5 33 33 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 34 34 H 1.09000 * 109.47054 * 180.02562 * 8 7 6 35 35 H 0.96700 * 113.99995 * 300.00001 * 13 11 9 36 36 H 0.96996 * 120.00253 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6354 2.1264 -1.3075 6 6 2.1450 3.5690 -1.3072 7 6 3.6698 3.5713 -1.1812 8 6 4.0745 2.8873 0.1262 9 6 3.5649 1.4442 0.1258 10 1 3.9995 0.9051 -0.7160 11 6 3.9696 0.7603 1.4332 12 1 3.6063 -0.2674 1.4332 13 8 3.3998 1.4670 2.5367 14 6 5.4715 0.7614 1.5567 15 1 6.0769 1.2059 0.7807 16 6 6.0728 0.1960 2.6611 17 7 7.3835 0.1974 2.7693 18 14 5.0258 -0.5723 4.0040 19 1 4.8042 -2.0085 3.6982 20 1 5.7233 -0.4459 5.3088 21 1 3.7174 0.1269 4.0723 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0700 1.5873 -2.1492 28 1 0.5491 2.1251 -1.3971 29 1 1.8563 4.0565 -2.2385 30 1 1.7101 4.1079 -0.4656 31 1 4.0329 4.5990 -1.1814 32 1 4.1048 3.0325 -2.0229 33 1 3.6396 3.4262 0.9679 34 1 5.1608 2.8893 0.2162 35 1 3.6798 2.3904 2.5992 36 1 7.8065 -0.2008 3.5461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306865332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -87.731846 kcal Electronic energy + Delta-G solvation = -15291.072138 eV Core-core repulsion = 12966.662123 eV Total energy + Delta-G solvation = -2324.410015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01347 -35.42886 -33.54449 -32.17349 -30.54790 -28.65284 -26.71087 -23.57153 -22.90937 -20.22022 -20.21478 -18.88742 -17.13963 -15.15404 -14.73563 -14.48211 -14.32452 -14.01811 -13.57872 -13.04529 -12.78326 -12.64858 -12.42903 -11.99459 -11.51015 -11.11847 -11.10683 -11.03267 -10.65141 -10.59106 -10.46402 -10.31731 -10.10069 -9.81246 -9.48212 -9.32297 -8.71865 -8.54520 -8.08310 -6.06180 -4.15157 3.42070 3.51696 3.78452 4.58784 5.07660 5.16644 5.20616 5.28352 5.45132 5.53893 5.64611 5.74156 5.89330 5.95151 6.02060 6.02710 6.06665 6.11511 6.15431 6.26558 6.38645 6.40605 6.52331 6.59535 6.64392 6.71516 6.80380 6.92738 7.07891 7.16135 7.50142 7.70763 8.37563 8.91167 9.11098 9.60022 11.04557 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.011399 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.688634 B = 2455.802870 C = 3034.431156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.071 0.929 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.108 4.108 9 C -0.095 4.095 10 H 0.063 0.937 11 C 0.195 3.805 12 H 0.055 0.945 13 O -0.581 6.581 14 C -0.557 4.557 15 H 0.074 0.926 16 C 0.080 3.920 17 N -0.897 5.897 18 Si 0.867 3.133 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.217 1.217 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.353 0.647 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 3.995 -6.316 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.097 4.097 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.114 4.114 10 H 0.082 0.918 11 C 0.138 3.862 12 H 0.073 0.927 13 O -0.388 6.388 14 C -0.594 4.594 15 H 0.092 0.908 16 C -0.123 4.123 17 N -0.534 5.534 18 Si 0.694 3.306 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.139 1.139 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.547 3.373 -6.116 13.495 hybrid contribution 0.104 -0.014 0.523 0.533 sum -11.443 3.359 -5.594 13.173 Atomic orbital electron populations 1.21804 0.96848 1.00722 1.01289 1.21625 0.94829 0.97433 1.02137 1.21148 0.96631 0.95101 0.96831 0.91104 1.21639 0.99549 0.95618 0.98303 1.21514 0.96440 0.96855 1.00591 1.21564 0.95220 0.99821 0.99044 1.21494 1.01948 0.95382 0.95678 1.21644 0.92966 0.96339 1.00444 0.91839 1.19839 0.92907 0.91464 0.82017 0.92716 1.86649 1.73755 1.26643 1.51737 1.21617 0.90524 1.39865 1.07391 0.90844 1.25023 0.94692 0.94383 0.98224 1.69965 1.09280 1.44463 1.29732 0.87087 0.83954 0.79119 0.80445 1.21592 1.22448 1.13893 0.93005 0.93124 0.93528 0.92672 0.91228 0.92613 0.92744 0.93132 0.92435 0.92960 0.92571 0.92811 0.90671 0.80058 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.12 -1.94 5.19 -26.73 -0.14 -2.07 16 3 C -0.08 -1.28 1.57 -90.62 -0.14 -1.42 16 4 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 5 C -0.11 -1.58 4.96 -26.73 -0.13 -1.71 16 6 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 7 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 8 C -0.11 -1.91 4.64 -26.71 -0.12 -2.04 16 9 C -0.10 -1.81 1.57 -90.60 -0.14 -1.95 16 10 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 11 C 0.19 4.45 1.77 -27.89 -0.05 4.41 16 12 H 0.06 1.31 5.75 -51.93 -0.30 1.01 16 13 O -0.58 -13.04 9.43 -35.23 -0.33 -13.37 16 14 C -0.56 -15.23 8.61 -34.44 -0.30 -15.53 16 15 H 0.07 2.17 6.96 -52.49 -0.37 1.80 16 16 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.87 22.00 26.99 -169.99 -4.59 17.41 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.22 -5.35 5.30 56.52 0.30 -5.05 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.60 6.57 -51.93 -0.34 0.26 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.92 6.78 -51.93 -0.35 0.57 16 34 H 0.07 1.52 6.62 -51.93 -0.34 1.18 16 35 H 0.35 7.20 7.33 45.56 0.33 7.54 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -29.59 267.20 -6.67 -36.26 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.47 Total: 5.73 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -1.08 Total: -23.33 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.33 Total: -13.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.59 Total: 17.41 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.59 -6.67 -36.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.476 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds