Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47645 * 2 1 4 4 H 1.09001 * 109.47362 * 54.99090 * 3 2 1 5 5 C 1.53006 * 109.46623 * 294.99642 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46991 * 60.00378 * 6 5 3 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 5 9 9 C 1.52997 * 109.47317 * 174.99822 * 3 2 1 10 10 H 1.08996 * 109.46952 * 59.99813 * 9 3 2 11 11 C 1.52996 * 109.47131 * 299.99507 * 9 3 2 12 12 H 1.09001 * 109.46997 * 60.00426 * 11 9 3 13 13 O 1.42898 * 109.47379 * 300.00404 * 11 9 3 14 14 C 1.50698 * 109.47188 * 179.97438 * 11 9 3 15 15 H 1.07998 * 120.00218 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00346 * 180.02562 * 16 14 11 18 18 Si 1.86806 * 120.00142 * 0.02562 * 16 14 11 19 19 H 1.48507 * 109.47041 * 89.99719 * 18 16 14 20 20 H 1.48493 * 109.47237 * 209.99491 * 18 16 14 21 21 H 1.48500 * 109.47007 * 329.99830 * 18 16 14 22 22 H 1.08993 * 109.47092 * 300.00720 * 1 2 3 23 23 H 1.09006 * 109.46455 * 60.00000 * 1 2 3 24 24 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47430 * 239.99253 * 2 1 3 26 26 H 1.09007 * 109.46700 * 119.99507 * 2 1 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 28 28 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 29 29 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 30 30 H 1.08993 * 109.47839 * 299.99931 * 6 5 3 31 31 H 1.09001 * 109.47289 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47611 * 59.99933 * 7 6 5 33 33 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 34 34 H 1.09000 * 109.47054 * 180.02562 * 8 7 6 35 35 H 0.96700 * 113.99995 * 300.00001 * 13 11 9 36 36 H 0.96996 * 120.00253 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6354 2.1264 -1.3075 6 6 2.1450 3.5690 -1.3072 7 6 3.6698 3.5713 -1.1812 8 6 4.0745 2.8873 0.1262 9 6 3.5649 1.4442 0.1258 10 1 3.9995 0.9051 -0.7160 11 6 3.9696 0.7603 1.4332 12 1 3.6063 -0.2674 1.4332 13 8 3.3998 1.4670 2.5367 14 6 5.4715 0.7614 1.5567 15 1 6.0769 1.2059 0.7807 16 6 6.0728 0.1960 2.6611 17 7 7.3835 0.1974 2.7693 18 14 5.0258 -0.5723 4.0040 19 1 4.8042 -2.0085 3.6982 20 1 5.7233 -0.4459 5.3088 21 1 3.7174 0.1269 4.0723 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0700 1.5873 -2.1492 28 1 0.5491 2.1251 -1.3971 29 1 1.8563 4.0565 -2.2385 30 1 1.7101 4.1079 -0.4656 31 1 4.0329 4.5990 -1.1814 32 1 4.1048 3.0325 -2.0229 33 1 3.6396 3.4262 0.9679 34 1 5.1608 2.8893 0.2162 35 1 3.6798 2.3904 2.5992 36 1 7.8065 -0.2008 3.5461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306865332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -106.519210 kcal Electronic energy + Delta-G solvation = -15291.886819 eV Core-core repulsion = 12966.662123 eV Total energy + Delta-G solvation = -2325.224696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45272 -37.12446 -34.75033 -34.36942 -32.07615 -29.86212 -28.60515 -24.87905 -24.52724 -21.70978 -21.46666 -20.34197 -19.19438 -16.84993 -16.73766 -15.87989 -15.66667 -15.59733 -14.84384 -14.77129 -14.31263 -14.01479 -13.85193 -13.41126 -13.29995 -12.94858 -12.43688 -12.33064 -12.20151 -12.02856 -11.84861 -11.79267 -11.55487 -11.24480 -11.12057 -10.86992 -10.69953 -10.42449 -9.91001 -8.31518 -6.42995 1.37877 1.43396 1.73595 2.44708 3.06291 3.84780 3.91538 3.96030 4.12788 4.30435 4.35837 4.48472 4.56003 4.64946 4.72923 4.75178 4.83265 4.89635 4.98270 5.08816 5.22978 5.25041 5.25194 5.29969 5.39570 5.43805 5.48656 5.51100 5.55000 5.68184 5.76701 5.84066 6.17138 6.69416 7.21841 7.39178 8.82748 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032676 B = 0.011399 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.688634 B = 2455.802870 C = 3034.431156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.071 4.071 4 H 0.066 0.934 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.105 4.105 9 C -0.090 4.090 10 H 0.048 0.952 11 C 0.201 3.799 12 H 0.048 0.952 13 O -0.581 6.581 14 C -0.552 4.552 15 H 0.038 0.962 16 C 0.023 3.977 17 N -0.944 5.944 18 Si 0.932 3.068 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.203 1.203 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.363 0.637 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 4.614 -6.881 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.090 4.090 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.142 4.142 9 C -0.109 4.109 10 H 0.066 0.934 11 C 0.144 3.856 12 H 0.066 0.934 13 O -0.388 6.388 14 C -0.590 4.590 15 H 0.057 0.943 16 C -0.175 4.175 17 N -0.584 5.584 18 Si 0.757 3.243 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.125 1.125 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.211 0.789 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.349 4.005 -6.693 16.332 hybrid contribution 1.039 -0.181 0.648 1.238 sum -13.310 3.825 -6.045 15.110 Atomic orbital electron populations 1.21751 0.94435 1.01730 1.02114 1.21628 0.96978 0.96750 1.00971 1.21066 0.93741 0.95839 0.98333 0.91572 1.21616 1.00979 0.95623 0.96458 1.21504 0.94600 0.96724 1.02153 1.21525 0.96926 1.00058 0.96734 1.21418 0.99588 0.95154 0.98061 1.21524 0.95557 0.96394 0.97434 0.93367 1.19675 0.89777 0.91913 0.84253 0.93433 1.86577 1.73281 1.27448 1.51527 1.21956 0.92958 1.38150 1.05915 0.94332 1.25868 0.95623 0.95261 1.00780 1.70096 1.11077 1.46455 1.30767 0.86092 0.82662 0.78188 0.77391 1.21485 1.22680 1.12496 0.93069 0.91325 0.92555 0.92496 0.93825 0.92602 0.90449 0.90657 0.91885 0.91581 0.92934 0.92187 0.94312 0.78937 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.67 71.98 0.70 -2.62 16 2 C -0.13 -3.73 5.19 30.59 0.16 -3.57 16 3 C -0.07 -2.16 1.57 -10.79 -0.02 -2.18 16 4 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 5 C -0.11 -2.65 4.96 30.60 0.15 -2.50 16 6 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 7 C -0.11 -3.18 5.92 30.59 0.18 -3.00 16 8 C -0.10 -3.69 4.64 30.61 0.14 -3.55 16 9 C -0.09 -3.40 1.57 -10.78 -0.02 -3.42 16 10 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 11 C 0.20 9.21 1.77 29.85 0.05 9.27 16 12 H 0.05 2.28 5.75 -2.39 -0.01 2.27 16 13 O -0.58 -25.36 9.43 -148.98 -1.40 -26.76 16 14 C -0.55 -31.08 8.61 25.60 0.22 -30.86 16 15 H 0.04 2.39 6.96 -2.91 -0.02 2.37 16 16 C 0.02 1.37 5.47 84.65 0.46 1.83 16 17 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 18 Si 0.93 46.02 26.99 68.60 1.85 47.87 16 19 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 21 H -0.20 -9.51 5.30 99.48 0.53 -8.98 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.35 6.57 -2.38 -0.02 1.33 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.51 6.17 -2.38 -0.01 1.49 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.58 6.56 -2.39 -0.02 1.56 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 2.00 6.78 -2.39 -0.02 1.99 16 34 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 35 H 0.36 14.41 7.33 -74.06 -0.54 13.87 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -64.32 267.20 3.28 -61.04 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.32 Total: 20.18 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 2.21 Total: -42.99 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.30 Total: -59.34 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.40 Total: -26.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.85 Total: 47.87 kcal Total: -64.32 3.28 -61.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.478 kcal (2) G-P(sol) polarization free energy of solvation -64.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds