Wall clock time and date at job start Mon Mar 30 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.53177 * 2 1 4 4 C 1.53035 * 109.50246 * 239.90379 * 2 1 3 5 5 N 1.46848 * 109.52142 * 180.87671 * 4 2 1 6 6 C 1.46906 * 111.00135 * 185.83611 * 5 4 2 7 7 C 1.50692 * 109.47035 * 170.00072 * 6 5 4 8 8 H 1.07998 * 120.00360 * 0.02562 * 7 6 5 9 9 C 1.37888 * 119.99831 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00029 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99583 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47277 * 90.00141 * 11 9 7 13 13 H 1.48501 * 109.46986 * 209.99885 * 11 9 7 14 14 H 1.48494 * 109.47363 * 329.99755 * 11 9 7 15 15 C 1.46847 * 111.19788 * 61.74047 * 5 4 2 16 16 C 1.53034 * 109.52486 * 298.25416 * 15 5 4 17 17 C 1.53114 * 109.50511 * 120.09579 * 2 1 3 18 18 H 1.09001 * 109.52084 * 57.69229 * 17 2 1 19 19 N 1.46897 * 109.52745 * 297.50074 * 17 2 1 20 20 H 1.09001 * 109.46650 * 299.90003 * 1 2 3 21 21 H 1.08999 * 109.46904 * 59.90090 * 1 2 3 22 22 H 1.08996 * 109.46983 * 179.90321 * 1 2 3 23 23 H 1.09003 * 109.46659 * 180.10209 * 3 2 1 24 24 H 1.09000 * 109.46940 * 300.09647 * 3 2 1 25 25 H 1.08996 * 109.47321 * 60.09906 * 3 2 1 26 26 H 1.09000 * 109.45907 * 300.89020 * 4 2 1 27 27 H 1.08999 * 109.46252 * 60.87596 * 4 2 1 28 28 H 1.09001 * 109.47066 * 290.00588 * 6 5 4 29 29 H 1.08998 * 109.46581 * 50.00081 * 6 5 4 30 30 H 0.97001 * 119.99636 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.46634 * 178.23927 * 15 5 4 32 32 H 1.09006 * 109.46422 * 58.27823 * 15 5 4 33 33 H 1.08997 * 109.50792 * 299.24185 * 16 15 5 34 34 H 1.09006 * 109.50471 * 179.11839 * 16 15 5 35 35 H 1.00898 * 111.00301 * 180.31432 * 19 17 2 36 36 H 1.00906 * 110.99765 * 304.27389 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 3.5093 -0.7420 -1.2379 6 6 4.0373 -1.3058 -2.4875 7 6 5.5269 -1.0860 -2.5477 8 1 6.0311 -0.5786 -1.7385 9 6 6.2462 -1.5326 -3.6360 10 7 7.5463 -1.3412 -3.6883 11 14 5.3740 -2.4095 -5.0359 12 1 4.9364 -1.4140 -6.0473 13 1 6.3034 -3.3806 -5.6671 14 1 4.1890 -3.1308 -4.5063 15 6 4.0230 -1.4728 -0.0724 16 6 3.5713 -0.7718 1.2107 17 6 2.0413 -0.7237 1.2487 18 1 1.6453 -1.7391 1.2690 19 7 1.6026 -0.0004 2.4496 20 1 -0.3633 0.5123 0.8909 21 1 -0.3633 0.5154 -0.8891 22 1 -0.3633 -1.0276 -0.0017 23 1 3.1316 1.4408 -0.0018 24 1 1.6774 1.9567 -0.8891 25 1 1.6803 1.9557 0.8908 26 1 1.6648 -1.7464 -1.2543 27 1 1.6907 -0.2020 -2.1389 28 1 3.8260 -2.3745 -2.5217 29 1 3.5628 -0.8142 -3.3368 30 1 8.0523 -1.6551 -4.4541 31 1 5.1121 -1.4961 -0.1094 32 1 3.6376 -2.4924 -0.0843 33 1 3.9678 0.2433 1.2298 34 1 3.9397 -1.3233 2.0758 35 1 1.9324 -0.4564 3.2871 36 1 1.9014 0.9630 2.4208 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307134727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:03 Heat of formation + Delta-G solvation = -7.297263 kcal Electronic energy + Delta-G solvation = -15111.804585 eV Core-core repulsion = 12823.175226 eV Total energy + Delta-G solvation = -2288.629359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49933 -35.25308 -32.83514 -32.38768 -29.90048 -27.49205 -26.97717 -25.40061 -22.82954 -21.89269 -20.10965 -18.13588 -16.81884 -15.93452 -15.29689 -14.49128 -14.29930 -13.89842 -13.82354 -13.54300 -12.98399 -12.62833 -12.33510 -11.92017 -11.66224 -11.54488 -11.34149 -11.07977 -11.04512 -10.66550 -10.59094 -10.25232 -10.16835 -9.87097 -9.71378 -9.26985 -8.57315 -8.45007 -7.31593 -6.05729 -4.02772 3.28117 3.35501 3.37893 4.41750 4.67579 4.75753 4.91878 5.17335 5.24873 5.28760 5.55051 5.61490 5.74331 5.87911 5.95389 6.00281 6.05604 6.14266 6.16669 6.22071 6.38317 6.48538 6.50959 6.61555 6.66709 6.83350 6.89693 7.01819 7.25486 7.52939 7.60940 7.94074 8.09425 8.66667 9.02486 9.56399 11.07377 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047955 B = 0.008362 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.744873 B = 3347.691290 C = 3609.719246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 C -0.134 4.134 4 C 0.062 3.938 5 N -0.524 5.524 6 C 0.162 3.838 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.067 3.933 16 C -0.151 4.151 17 C 0.100 3.900 18 H 0.071 0.929 19 N -0.844 5.844 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.020 0.980 27 H 0.069 0.931 28 H -0.013 1.013 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.088 0.912 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.335 0.665 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 1.658 8.780 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.067 4.067 5 N -0.248 5.248 6 C 0.036 3.964 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.702 3.298 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.062 4.062 16 C -0.191 4.191 17 C -0.011 4.011 18 H 0.090 0.910 19 N -0.373 5.373 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.005 0.995 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.166 1.942 8.451 14.940 hybrid contribution 0.471 -1.276 -0.803 1.579 sum -11.695 0.666 7.648 13.989 Atomic orbital electron populations 1.21732 0.94548 1.01152 1.01449 1.20538 0.94890 0.96159 0.93722 1.21790 1.02660 0.94396 1.00310 1.22134 0.89872 0.97615 0.97098 1.61830 1.04830 1.54593 1.03545 1.20152 0.96825 0.92298 0.87150 1.21035 0.89883 1.37323 1.06379 0.90184 1.24904 0.94730 0.95734 0.98002 1.69895 1.06131 1.47266 1.30722 0.86868 0.79853 0.80096 0.82989 1.20143 1.21219 1.19312 1.21884 1.01621 0.93477 0.89169 1.22497 0.96767 1.01878 0.97926 1.21487 0.92692 0.97111 0.89840 0.91044 1.59028 1.67513 1.06702 1.04052 0.91687 0.93431 0.93526 0.90894 0.93105 0.93640 0.96140 0.91300 0.99535 0.95830 0.92689 0.89412 0.96392 0.91079 0.92590 0.85360 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.35 37.16 0.31 -1.37 16 2 C -0.05 -0.76 0.59 -154.43 -0.09 -0.85 16 3 C -0.13 -1.91 7.65 37.16 0.28 -1.63 16 4 C 0.06 1.09 4.18 -3.83 -0.02 1.07 16 5 N -0.52 -10.90 3.93 -236.12 -0.93 -11.82 16 6 C 0.16 3.97 3.79 -4.98 -0.02 3.95 16 7 C -0.51 -14.44 8.98 -34.44 -0.31 -14.75 16 8 H 0.08 2.47 7.36 -52.49 -0.39 2.08 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 11 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 15 C 0.07 1.29 5.29 -3.84 -0.02 1.27 16 16 C -0.15 -2.28 5.31 -26.65 -0.14 -2.42 16 17 C 0.10 1.37 2.50 -67.59 -0.17 1.20 16 18 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 19 N -0.84 -9.59 8.57 -4.56 -0.04 -9.63 16 20 H 0.06 0.80 7.68 -51.93 -0.40 0.41 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.19 6.01 -51.93 -0.31 0.88 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.56 6.54 -51.93 -0.34 0.22 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 28 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 29 H 0.02 0.58 7.41 -51.93 -0.38 0.20 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 1.90 6.70 -51.93 -0.35 1.56 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.11 6.58 -51.93 -0.34 0.77 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.33 3.30 9.04 -39.29 -0.36 2.94 16 36 H 0.34 3.67 6.94 -39.29 -0.27 3.40 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -29.61 271.58 -7.09 -36.70 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.05 Total: 2.20 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.27 Total: -11.65 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.19 Total: -48.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.61 -7.09 -36.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307134727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.405 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds