Wall clock time and date at job start Mon Mar 30 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46993 * 2 1 4 4 C 1.50697 * 109.47240 * 119.99370 * 2 1 3 5 5 H 1.08006 * 119.99920 * 120.00226 * 4 2 1 6 6 C 1.37876 * 120.00428 * 300.00376 * 4 2 1 7 7 N 1.31519 * 119.99563 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00432 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46678 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47258 * 119.99423 * 8 6 4 11 11 H 1.48493 * 109.47346 * 240.00028 * 8 6 4 12 12 C 1.53001 * 109.47486 * 239.99872 * 2 1 3 13 13 H 1.09001 * 109.46652 * 299.99782 * 12 2 1 14 14 C 1.53000 * 109.46886 * 59.99437 * 12 2 1 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 18 18 C 1.52997 * 109.47127 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 20 20 H 1.09001 * 109.47375 * 59.99966 * 19 16 15 21 21 O 1.42905 * 109.46921 * 179.97438 * 19 16 15 22 22 C 1.52996 * 109.47302 * 179.97438 * 12 2 1 23 23 H 1.08996 * 109.47452 * 60.00131 * 1 2 3 24 24 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47054 * 300.00291 * 1 2 3 26 26 H 0.97000 * 119.99425 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47398 * 300.00496 * 14 12 2 28 28 H 1.09001 * 109.47194 * 60.00677 * 14 12 2 29 29 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 30 30 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 31 31 H 1.09001 * 109.47289 * 299.99953 * 18 16 15 32 32 H 1.09004 * 109.47261 * 59.99697 * 18 16 15 33 33 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 34 34 H 0.96697 * 113.99519 * 179.97438 * 21 19 16 35 35 H 1.08992 * 109.47554 * 299.99692 * 22 12 2 36 36 H 1.09004 * 109.47108 * 59.99942 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3225 -1.1192 4.0081 9 1 3.1475 -2.2860 3.6039 10 1 3.1473 -0.1853 4.8160 11 1 1.1680 -1.5863 4.8166 12 6 2.0401 -0.7213 -1.2492 13 1 1.6767 -1.7489 -1.2491 14 6 1.5300 -0.0001 -2.4985 15 6 2.0395 -0.7217 -3.7477 16 6 3.5696 -0.7222 -3.7479 17 1 3.9332 0.3054 -3.7482 18 6 4.0791 -1.4443 -4.9968 19 6 4.0796 -1.4433 -2.4987 20 1 3.7159 -2.4709 -2.4984 21 8 5.5086 -1.4443 -2.4993 22 6 3.5700 -0.7207 -1.2495 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7095 1.1620 3.4843 27 1 0.4399 -0.0001 -2.4984 28 1 1.8933 1.0276 -2.4986 29 1 1.6759 -1.7493 -3.7475 30 1 1.6765 -0.2078 -4.6377 31 1 3.7154 -2.4719 -4.9962 32 1 3.7157 -0.9309 -5.8871 33 1 5.1691 -1.4443 -4.9972 34 1 5.9019 -1.8857 -1.7341 35 1 3.9330 0.3070 -1.2498 36 1 3.9337 -1.2342 -0.3594 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307220836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:08 Heat of formation + Delta-G solvation = -109.457516 kcal Electronic energy + Delta-G solvation = -14984.500617 eV Core-core repulsion = 12659.148506 eV Total energy + Delta-G solvation = -2325.352111 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36556 -37.26944 -35.69931 -33.78548 -31.01372 -30.59869 -27.17019 -26.58020 -23.36106 -23.05066 -20.90083 -20.58838 -18.27910 -17.94680 -16.69705 -16.11766 -15.51484 -15.17531 -14.98876 -14.31382 -14.21904 -13.81473 -13.46619 -13.24599 -13.12154 -12.84067 -12.79142 -12.56807 -12.25316 -12.15055 -11.79474 -11.67788 -11.59477 -11.35335 -11.19446 -10.95710 -10.51952 -10.41239 -10.29421 -8.05769 -6.18289 1.38872 1.41137 1.51360 2.43866 3.21562 3.36567 3.84434 3.89019 4.17457 4.28961 4.38182 4.53668 4.62435 4.64264 4.66933 4.85737 4.90913 5.00777 5.07146 5.09290 5.14283 5.28687 5.30013 5.35534 5.43053 5.47773 5.52583 5.58309 5.62551 5.69241 6.05389 6.20455 6.43603 6.90907 6.94407 7.49450 8.99169 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.008780 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.932968 B = 3188.371988 C = 3736.689321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.045 3.955 3 H -0.012 1.012 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.922 5.922 8 Si 0.949 3.051 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.066 4.066 13 H 0.053 0.947 14 C -0.116 4.116 15 C -0.103 4.103 16 C -0.084 4.084 17 H 0.060 0.940 18 C -0.135 4.135 19 C 0.114 3.886 20 H 0.056 0.944 21 O -0.580 6.580 22 C -0.127 4.127 23 H 0.034 0.966 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.258 0.742 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.388 0.612 35 H 0.042 0.958 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -4.906 -11.518 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.026 3.974 3 H 0.006 0.994 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.775 3.225 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.085 4.085 13 H 0.072 0.928 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.103 4.103 17 H 0.079 0.921 18 C -0.192 4.192 19 C 0.056 3.944 20 H 0.074 0.926 21 O -0.388 6.388 22 C -0.165 4.165 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.237 0.763 35 H 0.060 0.940 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.813 -4.483 -11.948 13.319 hybrid contribution 0.205 -0.304 1.984 2.018 sum 4.018 -4.787 -9.964 11.762 Atomic orbital electron populations 1.21701 0.98713 0.98667 0.99624 1.18658 0.92593 0.93884 0.92229 0.99356 1.21619 1.30236 1.12022 0.91782 0.92636 1.25754 0.95598 0.95802 1.01937 1.70048 1.38263 1.24428 1.23526 0.85645 0.78134 0.78802 0.79932 1.18902 1.21018 1.20861 1.20997 0.94048 0.98709 0.94703 0.92839 1.21666 1.00493 0.98810 0.94352 1.21547 0.93574 1.01238 0.97657 1.21113 0.95652 0.99458 0.94049 0.92112 1.21695 1.00990 1.00244 0.96281 1.21869 0.80114 0.97898 0.94534 0.92595 1.86394 1.19983 1.82295 1.50127 1.22119 0.96595 1.00126 0.97691 0.94749 0.95581 0.93299 0.93317 0.91736 0.93475 0.91272 0.89935 0.92347 0.91546 0.92896 0.76299 0.93952 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.62 71.98 0.62 -5.66 16 2 C 0.04 2.24 1.89 -11.54 -0.02 2.21 16 3 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 4 C -0.52 -28.25 7.83 25.60 0.20 -28.05 16 5 H 0.06 2.95 6.71 -2.91 -0.02 2.93 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.02 16 8 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C -0.07 -2.62 1.74 -10.79 -0.02 -2.64 16 13 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.12 -3.85 4.85 30.59 0.15 -3.70 16 15 C -0.10 -2.68 5.20 30.60 0.16 -2.52 16 16 C -0.08 -2.29 2.46 -10.79 -0.03 -2.31 16 17 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.13 -3.01 9.05 71.98 0.65 -2.36 16 19 C 0.11 3.44 2.90 30.61 0.09 3.53 16 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 21 O -0.58 -16.67 12.65 -148.98 -1.88 -18.56 16 22 C -0.13 -4.76 4.58 30.61 0.14 -4.62 16 23 H 0.03 1.45 6.43 -2.39 -0.02 1.44 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 2.67 6.07 -2.39 -0.01 2.66 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.06 2.11 6.43 -2.39 -0.02 2.10 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.05 1.25 7.68 -2.39 -0.02 1.24 16 34 H 0.39 8.56 9.08 -74.06 -0.67 7.89 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 2.20 6.62 -2.38 -0.02 2.19 16 Total: -1.00 -61.35 276.14 3.14 -58.21 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.37 Total: 13.77 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 2.39 Total: -45.29 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.24 Total: -54.02 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.88 Total: -18.56 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.35 3.14 -58.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307220836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.250 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds