Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.53000 * 109.46947 * 239.99683 * 2 1 3 5 5 H 1.09001 * 109.47358 * 305.33634 * 4 2 1 6 6 O 1.42905 * 109.46938 * 185.33654 * 4 2 1 7 7 C 1.50700 * 109.47156 * 65.33839 * 4 2 1 8 8 H 1.08006 * 119.99737 * 359.97438 * 7 4 2 9 9 C 1.37879 * 120.00065 * 179.97438 * 7 4 2 10 10 N 1.31511 * 119.99860 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 119.99828 * 179.97438 * 9 7 4 12 12 H 1.48501 * 109.47440 * 89.99927 * 11 9 7 13 13 H 1.48501 * 109.47087 * 209.99933 * 11 9 7 14 14 H 1.48500 * 109.47175 * 330.00218 * 11 9 7 15 15 C 1.52996 * 109.46914 * 120.00109 * 2 1 3 16 16 C 1.53001 * 109.47502 * 55.69104 * 15 2 1 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 2 18 18 C 1.53006 * 109.46938 * 60.00344 * 17 16 15 19 19 C 1.53001 * 109.46848 * 299.99296 * 18 17 16 20 20 C 1.53005 * 109.47077 * 295.68851 * 15 2 1 21 21 H 1.09000 * 109.46794 * 60.00514 * 1 2 3 22 22 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47254 * 299.99910 * 1 2 3 24 24 H 0.96704 * 114.00071 * 300.00181 * 6 4 2 25 25 H 0.97004 * 119.99301 * 179.97438 * 10 9 7 26 26 H 1.09002 * 109.47044 * 175.69058 * 15 2 1 27 27 H 1.09002 * 109.46933 * 300.00022 * 16 15 2 28 28 H 1.08998 * 109.47092 * 60.00256 * 16 15 2 29 29 H 1.08999 * 109.47636 * 300.00458 * 17 16 15 30 30 H 1.08999 * 109.47124 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46831 * 180.02562 * 18 17 16 32 32 H 1.08992 * 109.47498 * 59.99470 * 18 17 16 33 33 H 1.08999 * 109.47823 * 300.00622 * 19 18 17 34 34 H 1.08998 * 109.47052 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47113 * 300.00321 * 20 15 2 36 36 H 1.08996 * 109.46552 * 60.00728 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6007 -1.7177 -1.2983 6 8 3.4635 -0.8308 -1.1882 7 6 1.6485 0.0612 -2.4762 8 1 1.0912 0.9809 -2.3750 9 6 2.0016 -0.3968 -3.7278 10 7 2.6806 -1.5164 -3.8508 11 14 1.5157 0.5729 -5.2486 12 1 2.5859 1.5487 -5.5764 13 1 1.3281 -0.3581 -6.3902 14 1 0.2467 1.2989 -4.9882 15 6 2.0400 -0.7213 1.2492 16 6 1.4434 -2.1291 1.3046 17 6 1.9539 -2.8505 2.5535 18 6 1.5347 -2.0696 3.8007 19 6 2.1314 -0.6618 3.7454 20 6 1.6204 0.0599 2.4961 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.9218 0.0195 -1.1426 25 1 2.9287 -1.8388 -4.7314 26 1 3.1272 -0.7886 1.2115 27 1 0.3561 -2.0617 1.3424 28 1 1.7424 -2.6856 0.4164 29 1 3.0411 -2.9179 2.5154 30 1 1.5285 -3.8533 2.5932 31 1 1.8988 -2.5834 4.6905 32 1 0.4475 -2.0022 3.8389 33 1 3.2186 -0.7291 3.7071 34 1 1.8324 -0.1053 4.6336 35 1 2.0454 1.0628 2.4567 36 1 0.5332 0.1271 2.5339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307445010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -93.120786 kcal Electronic energy + Delta-G solvation = -15081.088589 eV Core-core repulsion = 12756.444892 eV Total energy + Delta-G solvation = -2324.643697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.81680 -35.78851 -32.75376 -32.05384 -30.37711 -28.59391 -26.07416 -23.92570 -22.47085 -21.57515 -19.78779 -18.20419 -16.89230 -14.91169 -14.64093 -14.46900 -14.19851 -13.85910 -13.74464 -13.23986 -12.80032 -12.02904 -11.86405 -11.66868 -11.61063 -11.38445 -10.91156 -10.82790 -10.71143 -10.64507 -10.44646 -10.24613 -10.05774 -9.72052 -9.55699 -9.34643 -8.71054 -8.48306 -7.92842 -5.93681 -4.10105 3.30407 3.37591 3.40204 4.43867 5.04669 5.11673 5.13750 5.32832 5.59494 5.62556 5.80280 5.87795 5.90637 5.91772 5.97650 6.11972 6.22758 6.23396 6.29496 6.42766 6.51009 6.54948 6.60597 6.70407 6.72331 6.83579 6.97315 7.06929 7.14554 7.26599 7.85036 7.96917 8.30231 8.92964 9.47322 9.66859 11.10380 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.055067 B = 0.007943 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.352692 B = 3524.286348 C = 3697.358105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 H 0.054 0.946 4 C 0.234 3.766 5 H 0.056 0.944 6 O -0.566 6.566 7 C -0.566 4.566 8 H 0.055 0.945 9 C 0.077 3.923 10 N -0.862 5.862 11 Si 0.885 3.115 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.076 4.076 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.116 4.116 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.342 0.658 25 H 0.258 0.742 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 0.918 11.825 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.072 0.928 4 C 0.177 3.823 5 H 0.073 0.927 6 O -0.368 6.368 7 C -0.604 4.604 8 H 0.073 0.927 9 C -0.128 4.128 10 N -0.498 5.498 11 Si 0.712 3.288 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.094 4.094 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.153 4.153 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.185 0.815 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.305 0.125 11.677 11.903 hybrid contribution -0.205 1.154 -0.953 1.511 sum -2.510 1.279 10.725 11.089 Atomic orbital electron populations 1.21742 0.96275 1.00991 1.00164 1.21888 0.95555 0.99213 0.96444 0.92793 1.19417 0.78512 0.95658 0.88743 0.92652 1.86553 1.21122 1.32397 1.96736 1.21750 1.37560 1.09289 0.91779 0.92691 1.25055 0.94270 0.94602 0.98919 1.70081 1.36482 1.20190 1.23063 0.86744 0.78947 0.80032 0.83058 1.20656 1.21227 1.19923 1.21081 1.00461 0.94261 0.93605 1.21634 0.99883 0.96261 0.97360 1.21547 1.00882 0.98150 0.95059 1.21519 1.00334 0.95930 0.97630 1.21538 1.00377 0.95860 0.97761 1.21677 1.00644 0.98411 0.94603 0.92296 0.93261 0.94659 0.81474 0.93175 0.91123 0.92406 0.91168 0.92270 0.92808 0.92940 0.92456 0.92329 0.92971 0.92766 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.28 37.16 0.31 -2.21 16 2 C -0.11 -2.25 1.87 -90.62 -0.17 -2.42 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.23 5.84 2.01 -27.88 -0.06 5.79 16 5 H 0.06 1.53 6.81 -51.93 -0.35 1.18 16 6 O -0.57 -14.52 11.76 -35.23 -0.41 -14.94 16 7 C -0.57 -15.49 8.06 -34.44 -0.28 -15.77 16 8 H 0.05 1.48 7.08 -52.48 -0.37 1.11 16 9 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 10 N -0.86 -25.72 12.84 55.43 0.71 -25.01 16 11 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C -0.08 -1.32 1.84 -90.62 -0.17 -1.49 16 16 C -0.11 -1.94 4.48 -26.73 -0.12 -2.06 16 17 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 18 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 19 C -0.12 -1.51 5.93 -26.70 -0.16 -1.67 16 20 C -0.12 -1.70 4.95 -26.70 -0.13 -1.83 16 21 H 0.06 1.18 6.97 -51.93 -0.36 0.82 16 22 H 0.05 0.91 6.35 -51.93 -0.33 0.58 16 23 H 0.03 0.57 6.54 -51.93 -0.34 0.23 16 24 H 0.34 7.89 9.04 45.56 0.41 8.30 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.07 1.33 7.41 -51.93 -0.38 0.95 16 27 H 0.06 0.95 6.35 -51.93 -0.33 0.62 16 28 H 0.07 1.38 6.66 -51.93 -0.35 1.04 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -29.37 273.33 -7.05 -36.42 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.26 Total: 6.13 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -1.19 Total: -23.08 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.71 Total: -25.01 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.41 Total: -14.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.37 -7.05 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.696 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds