Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.53000 * 109.46947 * 239.99683 * 2 1 3 5 5 H 1.09001 * 109.47358 * 305.33634 * 4 2 1 6 6 O 1.42905 * 109.46938 * 185.33654 * 4 2 1 7 7 C 1.50700 * 109.47156 * 65.33839 * 4 2 1 8 8 H 1.08006 * 119.99737 * 359.97438 * 7 4 2 9 9 C 1.37879 * 120.00065 * 179.97438 * 7 4 2 10 10 N 1.31511 * 119.99860 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 119.99828 * 179.97438 * 9 7 4 12 12 H 1.48501 * 109.47440 * 89.99927 * 11 9 7 13 13 H 1.48501 * 109.47087 * 209.99933 * 11 9 7 14 14 H 1.48500 * 109.47175 * 330.00218 * 11 9 7 15 15 C 1.52996 * 109.46914 * 120.00109 * 2 1 3 16 16 C 1.53001 * 109.47502 * 55.69104 * 15 2 1 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 2 18 18 C 1.53006 * 109.46938 * 60.00344 * 17 16 15 19 19 C 1.53001 * 109.46848 * 299.99296 * 18 17 16 20 20 C 1.53005 * 109.47077 * 295.68851 * 15 2 1 21 21 H 1.09000 * 109.46794 * 60.00514 * 1 2 3 22 22 H 1.08998 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47254 * 299.99910 * 1 2 3 24 24 H 0.96704 * 114.00071 * 300.00181 * 6 4 2 25 25 H 0.97004 * 119.99301 * 179.97438 * 10 9 7 26 26 H 1.09002 * 109.47044 * 175.69058 * 15 2 1 27 27 H 1.09002 * 109.46933 * 300.00022 * 16 15 2 28 28 H 1.08998 * 109.47092 * 60.00256 * 16 15 2 29 29 H 1.08999 * 109.47636 * 300.00458 * 17 16 15 30 30 H 1.08999 * 109.47124 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46831 * 180.02562 * 18 17 16 32 32 H 1.08992 * 109.47498 * 59.99470 * 18 17 16 33 33 H 1.08999 * 109.47823 * 300.00622 * 19 18 17 34 34 H 1.08998 * 109.47052 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47113 * 300.00321 * 20 15 2 36 36 H 1.08996 * 109.46552 * 60.00728 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6007 -1.7177 -1.2983 6 8 3.4635 -0.8308 -1.1882 7 6 1.6485 0.0612 -2.4762 8 1 1.0912 0.9809 -2.3750 9 6 2.0016 -0.3968 -3.7278 10 7 2.6806 -1.5164 -3.8508 11 14 1.5157 0.5729 -5.2486 12 1 2.5859 1.5487 -5.5764 13 1 1.3281 -0.3581 -6.3902 14 1 0.2467 1.2989 -4.9882 15 6 2.0400 -0.7213 1.2492 16 6 1.4434 -2.1291 1.3046 17 6 1.9539 -2.8505 2.5535 18 6 1.5347 -2.0696 3.8007 19 6 2.1314 -0.6618 3.7454 20 6 1.6204 0.0599 2.4961 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.9218 0.0195 -1.1426 25 1 2.9287 -1.8388 -4.7314 26 1 3.1272 -0.7886 1.2115 27 1 0.3561 -2.0617 1.3424 28 1 1.7424 -2.6856 0.4164 29 1 3.0411 -2.9179 2.5154 30 1 1.5285 -3.8533 2.5932 31 1 1.8988 -2.5834 4.6905 32 1 0.4475 -2.0022 3.8389 33 1 3.2186 -0.7291 3.7071 34 1 1.8324 -0.1053 4.6336 35 1 2.0454 1.0628 2.4567 36 1 0.5332 0.1271 2.5339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307445010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -111.524536 kcal Electronic energy + Delta-G solvation = -15081.886636 eV Core-core repulsion = 12756.444892 eV Total energy + Delta-G solvation = -2325.441744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22956 -37.52826 -34.36826 -34.21676 -31.55991 -30.09059 -28.00462 -25.62005 -23.84955 -23.02788 -21.11062 -19.71156 -18.95667 -16.66124 -16.43023 -16.16415 -15.75772 -15.11172 -14.96401 -14.91639 -14.59354 -13.55413 -13.39670 -13.10502 -13.02562 -12.86659 -12.77527 -12.62142 -12.34700 -12.07698 -12.01296 -11.71222 -11.54332 -11.12689 -10.96141 -10.75965 -10.71939 -10.50122 -9.87585 -8.09536 -6.33358 1.39072 1.39502 1.50190 2.40169 3.15559 3.88556 3.91998 3.97875 4.28557 4.32263 4.36494 4.58214 4.60424 4.69816 4.72096 4.78558 4.83274 4.91411 4.95641 5.16138 5.20227 5.26472 5.32782 5.33235 5.38952 5.44577 5.50119 5.53176 5.62490 5.71404 5.80906 5.97533 6.18993 6.79209 7.37737 7.60832 8.94462 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.055067 B = 0.007943 C = 0.007571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.352692 B = 3524.286348 C = 3697.358105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.052 0.948 4 C 0.235 3.765 5 H 0.019 0.981 6 O -0.582 6.582 7 C -0.576 4.576 8 H 0.058 0.942 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.954 3.046 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C -0.070 4.070 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.110 4.110 21 H 0.041 0.959 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.352 0.648 25 H 0.259 0.741 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 2.075 13.346 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 H 0.071 0.929 4 C 0.177 3.823 5 H 0.037 0.963 6 O -0.385 6.385 7 C -0.614 4.614 8 H 0.076 0.924 9 C -0.180 4.180 10 N -0.541 5.541 11 Si 0.779 3.221 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.189 1.189 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.148 4.148 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.196 0.804 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.193 1.298 13.209 13.652 hybrid contribution 0.091 0.768 -1.426 1.622 sum -3.102 2.066 11.784 12.359 Atomic orbital electron populations 1.21683 0.94964 1.01038 1.00894 1.21709 0.96570 0.98562 0.95407 0.92906 1.19304 0.78117 0.94104 0.90731 0.96293 1.86496 1.21777 1.33354 1.96919 1.22145 1.37019 1.09343 0.92901 0.92390 1.25913 0.94276 0.95540 1.02296 1.70228 1.38113 1.22039 1.23740 0.85642 0.78939 0.78545 0.78948 1.19946 1.21075 1.18940 1.20984 0.99167 0.94710 0.93966 1.21572 1.00227 0.95910 0.97210 1.21528 1.00359 0.98794 0.94754 1.21508 1.00870 0.95564 0.97044 1.21538 1.00192 0.96046 0.97550 1.21623 1.01145 0.98301 0.93716 0.94013 0.93565 0.91382 0.80379 0.93260 0.93037 0.91778 0.95186 0.93078 0.91808 0.90839 0.91651 0.92661 0.90537 0.92272 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.28 71.98 0.60 -4.10 16 2 C -0.10 -4.16 1.87 -10.79 -0.02 -4.18 16 3 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.23 12.08 2.01 29.85 0.06 12.14 16 5 H 0.02 1.12 6.81 -2.39 -0.02 1.11 16 6 O -0.58 -30.91 11.76 -148.98 -1.75 -32.67 16 7 C -0.58 -32.01 8.06 25.60 0.21 -31.80 16 8 H 0.06 3.12 7.08 -2.91 -0.02 3.10 16 9 C 0.02 1.21 5.40 84.66 0.46 1.67 16 10 N -0.90 -55.30 12.84 21.45 0.28 -55.03 16 11 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.07 -2.40 1.84 -10.79 -0.02 -2.42 16 16 C -0.11 -3.81 4.48 30.59 0.14 -3.67 16 17 C -0.12 -3.20 5.92 30.60 0.18 -3.02 16 18 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 19 C -0.12 -2.59 5.93 30.61 0.18 -2.41 16 20 C -0.11 -2.95 4.95 30.61 0.15 -2.80 16 21 H 0.04 1.64 6.97 -2.39 -0.02 1.63 16 22 H 0.05 1.69 6.35 -2.39 -0.02 1.67 16 23 H 0.07 2.03 6.54 -2.39 -0.02 2.01 16 24 H 0.35 16.69 9.04 -74.05 -0.67 16.02 16 25 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 26 H 0.05 1.96 7.41 -2.39 -0.02 1.94 16 27 H 0.06 2.07 6.35 -2.39 -0.02 2.05 16 28 H 0.03 1.24 6.66 -2.39 -0.02 1.22 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.70 6.54 -2.39 -0.02 1.69 16 Total: -1.00 -63.76 273.33 3.04 -60.72 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.38 Total: 23.62 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 2.11 Total: -42.88 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.28 Total: -55.03 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.75 Total: -32.67 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.76 3.04 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.808 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds