Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47237 * 2 1 4 4 C 1.53008 * 109.47324 * 240.00387 * 2 1 3 5 5 H 1.08994 * 109.47402 * 185.00131 * 4 2 1 6 6 O 1.42900 * 109.46801 * 305.00332 * 4 2 1 7 7 C 1.50706 * 109.46847 * 64.99910 * 4 2 1 8 8 H 1.08005 * 120.00138 * 0.02562 * 7 4 2 9 9 C 1.37871 * 119.99722 * 180.02562 * 7 4 2 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 120.00073 * 179.97438 * 9 7 4 12 12 H 1.48503 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 119.99815 * 11 9 7 14 14 H 1.48498 * 109.47295 * 240.00422 * 11 9 7 15 15 C 1.52995 * 109.47428 * 120.00306 * 2 1 3 16 16 C 1.52998 * 109.47054 * 300.00327 * 15 2 1 17 17 C 1.53004 * 109.47057 * 179.97438 * 16 15 2 18 18 C 1.53010 * 109.46932 * 59.99731 * 17 16 15 19 19 C 1.52998 * 109.47129 * 299.99850 * 18 17 16 20 20 C 1.53001 * 109.47363 * 179.97438 * 15 2 1 21 21 H 1.08995 * 109.46685 * 299.99707 * 1 2 3 22 22 H 1.09000 * 109.46858 * 59.99519 * 1 2 3 23 23 H 1.08991 * 109.47130 * 179.97438 * 1 2 3 24 24 H 0.96703 * 114.00265 * 60.00176 * 6 4 2 25 25 H 0.97000 * 119.99651 * 0.02562 * 10 9 7 26 26 H 1.09008 * 109.47064 * 60.00125 * 15 2 1 27 27 H 1.08999 * 109.46837 * 299.99245 * 16 15 2 28 28 H 1.08997 * 109.47319 * 59.99897 * 16 15 2 29 29 H 1.08991 * 109.47225 * 299.99843 * 17 16 15 30 30 H 1.08995 * 109.47180 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.46715 * 179.97438 * 18 17 16 32 32 H 1.08996 * 109.46733 * 60.00347 * 18 17 16 33 33 H 1.08999 * 109.47143 * 300.00364 * 19 18 17 34 34 H 1.09000 * 109.46751 * 180.02562 * 19 18 17 35 35 H 1.08995 * 109.47001 * 300.00141 * 20 15 2 36 36 H 1.09004 * 109.46869 * 60.00665 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1263 -0.7994 -1.2057 6 8 1.4702 -2.0303 -1.3096 7 6 1.6413 0.0573 -2.4766 8 1 1.0806 0.9748 -2.3757 9 6 1.9924 -0.4019 -3.7283 10 7 2.6747 -1.5195 -3.8514 11 14 1.4976 0.5625 -5.2497 12 1 0.7413 1.7742 -4.8433 13 1 2.7154 0.9673 -5.9970 14 1 0.6432 -0.2868 -6.1180 15 6 2.0400 -0.7213 1.2491 16 6 1.5300 -0.0002 2.4984 17 6 2.0396 -0.7218 3.7476 18 6 3.5697 -0.7223 3.7478 19 6 4.0796 -1.4435 2.4986 20 6 3.5700 -0.7218 1.2488 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.5040 -2.0372 -1.3506 25 1 2.9307 -2.0209 -3.0614 26 1 1.6767 -1.7490 1.2491 27 1 1.8934 1.0275 2.4985 28 1 0.4400 -0.0002 2.4984 29 1 1.6759 -1.7493 3.7474 30 1 1.6766 -0.2079 4.6376 31 1 3.9326 -1.2361 4.6380 32 1 3.9332 0.3052 3.7482 33 1 3.7159 -2.4710 2.4983 34 1 5.1696 -1.4442 2.4990 35 1 3.9330 -1.2358 0.3588 36 1 3.9337 0.3058 1.2487 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307445017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -118.158989 kcal Electronic energy + Delta-G solvation = -15108.398212 eV Core-core repulsion = 12782.668777 eV Total energy + Delta-G solvation = -2325.729435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31729 -37.93625 -34.41953 -34.10504 -31.72443 -30.08224 -28.12822 -25.60480 -23.53797 -23.07975 -20.87662 -20.49421 -19.27917 -17.21770 -16.48212 -15.90457 -15.73223 -15.13823 -14.91719 -14.78930 -14.53811 -14.37034 -13.51870 -13.32627 -12.89178 -12.83193 -12.63403 -12.33069 -12.12997 -12.05983 -11.97260 -11.93587 -11.65766 -11.31970 -11.22174 -10.84691 -10.69130 -10.45886 -9.88595 -8.56694 -6.39668 1.51269 1.60232 1.76098 2.56569 3.20324 3.74407 3.82359 3.90336 4.10848 4.19610 4.29827 4.43659 4.50903 4.53136 4.60312 4.65836 4.78800 4.81668 4.84595 5.07120 5.08733 5.17005 5.25381 5.27498 5.29505 5.36404 5.37415 5.45846 5.51244 5.65524 5.75176 5.97850 6.21091 6.62418 7.22138 7.55820 8.80169 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.050634 B = 0.008100 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.851603 B = 3455.990253 C = 3676.834753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.050 0.950 4 C 0.214 3.786 5 H 0.020 0.980 6 O -0.592 6.592 7 C -0.648 4.648 8 H 0.049 0.951 9 C -0.023 4.023 10 N -0.927 5.927 11 Si 1.117 2.883 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.281 1.281 15 C -0.070 4.070 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.115 4.115 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.359 0.641 25 H 0.266 0.734 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 3.207 13.796 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.069 0.931 4 C 0.157 3.843 5 H 0.038 0.962 6 O -0.399 6.399 7 C -0.686 4.686 8 H 0.067 0.933 9 C -0.224 4.224 10 N -0.563 5.563 11 Si 0.940 3.060 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.153 4.153 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.205 0.795 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.421 3.046 12.210 12.665 hybrid contribution -0.348 -0.009 1.152 1.204 sum -1.769 3.038 13.363 13.817 Atomic orbital electron populations 1.21682 0.94679 1.01248 1.01236 1.21578 0.96773 0.98402 0.94952 0.93149 1.19508 0.92131 0.80323 0.92338 0.96239 1.86410 1.24055 1.32341 1.97051 1.22943 1.40362 1.11017 0.94263 0.93279 1.27251 0.93317 0.96957 1.04892 1.70723 1.36079 1.15453 1.34085 0.82947 0.76492 0.74521 0.72061 1.19594 1.20764 1.20658 1.21023 0.94704 0.98935 0.94149 1.21620 1.00578 0.98968 0.93600 1.21533 0.95645 1.00625 0.97494 1.21520 0.95826 1.00666 0.97109 1.21518 1.00186 0.99088 0.94459 1.21587 0.96096 0.99997 0.97588 0.91156 0.93872 0.93116 0.79458 0.92310 0.92752 0.92330 0.91310 0.92340 0.90388 0.90580 0.91912 0.92688 0.91766 0.94982 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.23 71.98 0.59 -4.10 16 2 C -0.10 -3.97 1.76 -10.79 -0.02 -3.99 16 3 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 4 C 0.21 10.96 1.97 29.85 0.06 11.02 16 5 H 0.02 1.14 6.04 -2.39 -0.01 1.12 16 6 O -0.59 -30.65 11.45 -148.98 -1.71 -32.36 16 7 C -0.65 -36.48 8.06 25.60 0.21 -36.27 16 8 H 0.05 2.71 7.06 -2.91 -0.02 2.69 16 9 C -0.02 -1.34 5.40 84.65 0.46 -0.88 16 10 N -0.93 -58.55 13.53 21.45 0.29 -58.26 16 11 Si 1.12 51.05 29.90 68.60 2.05 53.10 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 C -0.07 -2.39 1.67 -10.80 -0.02 -2.40 16 16 C -0.11 -2.93 4.85 30.59 0.15 -2.78 16 17 C -0.12 -2.54 5.92 30.60 0.18 -2.36 16 18 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 19 C -0.11 -3.13 5.92 30.61 0.18 -2.95 16 20 C -0.12 -3.98 4.86 30.61 0.15 -3.83 16 21 H 0.07 2.06 6.43 -2.39 -0.02 2.05 16 22 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 23 H 0.05 1.74 6.71 -2.39 -0.02 1.73 16 24 H 0.36 16.83 7.19 -74.05 -0.53 16.30 16 25 H 0.27 17.40 6.47 -92.71 -0.60 16.80 16 26 H 0.05 2.02 7.82 -2.38 -0.02 2.00 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.72 6.43 -2.39 -0.02 1.70 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 1.32 6.32 -2.39 -0.02 1.30 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.87 271.46 3.44 -61.43 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.68 Total: 26.94 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 2.12 Total: -50.86 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.29 Total: -58.26 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.71 Total: -32.36 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -64.87 3.44 -61.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307445017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.724 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds