Wall clock time and date at job start Mon Mar 30 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50698 * 109.46976 * 120.00262 * 2 1 3 5 5 H 1.07998 * 120.00218 * 120.00310 * 4 2 1 6 6 C 1.37875 * 120.00046 * 299.99657 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00270 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46756 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46933 * 120.00262 * 8 6 4 11 11 H 1.48492 * 109.47603 * 240.00577 * 8 6 4 12 12 C 1.52996 * 109.46969 * 240.00160 * 2 1 3 13 13 H 1.08996 * 109.47452 * 300.00062 * 12 2 1 14 14 C 1.52997 * 109.47131 * 60.00062 * 12 2 1 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.46626 * 299.99539 * 15 14 12 17 17 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47592 * 300.00035 * 16 15 14 19 19 C 1.52997 * 109.46991 * 60.00378 * 16 15 14 20 20 H 1.09000 * 109.47611 * 59.99933 * 19 16 15 21 21 O 1.42909 * 109.47135 * 179.97438 * 19 16 15 22 22 C 1.52996 * 109.47131 * 299.99311 * 19 16 15 23 23 H 1.09000 * 109.47312 * 59.99779 * 1 2 3 24 24 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47067 * 299.99753 * 1 2 3 26 26 H 0.97007 * 119.99867 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47502 * 60.00153 * 14 12 2 28 28 H 1.09001 * 109.47289 * 299.99950 * 14 12 2 29 29 H 1.08993 * 109.46955 * 60.00011 * 15 14 12 30 30 H 1.09000 * 109.47050 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47045 * 60.00253 * 18 16 15 32 32 H 1.09001 * 109.47375 * 180.02562 * 18 16 15 33 33 H 1.09000 * 109.47140 * 300.00346 * 18 16 15 34 34 H 0.96701 * 113.99655 * 179.97438 * 21 19 16 35 35 H 1.08996 * 109.47452 * 300.00000 * 22 19 16 36 36 H 1.09000 * 109.47054 * 180.02562 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2857 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1679 -1.5868 4.8164 12 6 2.0400 -0.7212 -1.2492 13 1 1.6767 -1.7488 -1.2493 14 6 1.5300 0.0001 -2.4984 15 6 2.0405 -0.7208 -3.7478 16 6 3.5705 -0.7201 -3.7474 17 1 3.9342 -1.2333 -4.6376 18 6 4.0799 0.7226 -3.7471 19 6 4.0805 -1.4414 -2.4982 20 1 3.7176 -2.4692 -2.4984 21 8 5.5096 -1.4413 -2.4982 22 6 3.5700 -0.7206 -1.2490 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1608 3.4845 27 1 1.8933 1.0278 -2.4985 28 1 0.4400 0.0001 -2.4984 29 1 1.6775 -1.7485 -3.7480 30 1 1.6768 -0.2072 -4.6377 31 1 3.7162 1.2361 -2.8570 32 1 5.1699 0.7230 -3.7473 33 1 3.7166 1.2364 -4.6370 34 1 5.9028 -1.8827 -1.7329 35 1 3.9329 0.3072 -1.2487 36 1 3.9337 -1.2342 -0.3590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307538067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:12 Heat of formation + Delta-G solvation = -105.023304 kcal Electronic energy + Delta-G solvation = -15152.233350 eV Core-core repulsion = 12827.073521 eV Total energy + Delta-G solvation = -2325.159829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58494 -37.21843 -35.75112 -33.56999 -30.74045 -30.37006 -27.16507 -27.13658 -23.72509 -23.25757 -20.90891 -19.54338 -18.23180 -17.91366 -16.88969 -16.37090 -15.50916 -15.37522 -14.91183 -14.49335 -14.01091 -13.59439 -13.47669 -13.39419 -13.06654 -12.86942 -12.74653 -12.57630 -12.21862 -12.10266 -11.89583 -11.64443 -11.48873 -11.35156 -11.05592 -10.90713 -10.50400 -10.40355 -10.25983 -8.04997 -6.17260 1.38799 1.41231 1.51296 2.44168 3.22264 3.38673 3.84725 3.89490 4.21663 4.36415 4.42084 4.50608 4.59759 4.61854 4.69041 4.89334 4.95186 5.02587 5.07648 5.10873 5.15576 5.26840 5.29341 5.37679 5.41661 5.50744 5.55551 5.60391 5.67016 5.73465 6.06907 6.21417 6.44623 6.91414 6.95273 7.50268 8.99719 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036932 B = 0.009416 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.959660 B = 2972.809474 C = 3458.746720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.045 3.955 3 H -0.011 1.011 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.948 3.052 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.065 4.065 13 H 0.050 0.950 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.080 4.080 17 H 0.081 0.919 18 C -0.142 4.142 19 C 0.112 3.888 20 H 0.055 0.945 21 O -0.580 6.580 22 C -0.127 4.127 23 H 0.033 0.967 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.257 0.743 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.388 0.612 35 H 0.049 0.951 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -3.853 -11.034 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.007 0.993 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.562 5.562 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.084 4.084 13 H 0.069 0.931 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.099 4.099 17 H 0.099 0.901 18 C -0.199 4.199 19 C 0.053 3.947 20 H 0.073 0.927 21 O -0.388 6.388 22 C -0.165 4.165 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.237 0.763 35 H 0.068 0.932 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.857 -3.428 -11.462 12.570 hybrid contribution 0.190 -0.420 1.960 2.014 sum 4.047 -3.848 -9.502 11.021 Atomic orbital electron populations 1.21700 0.98776 0.98584 0.99601 1.18654 0.92531 0.93894 0.92232 0.99305 1.21603 1.30165 1.11955 0.91768 0.92723 1.25743 0.95643 0.95818 1.01889 1.70047 1.38210 1.24438 1.23469 0.85658 0.78107 0.78803 0.80011 1.18949 1.21059 1.20923 1.20979 0.94121 0.98563 0.94690 0.93104 1.21689 1.00247 0.99211 0.94210 1.21530 0.93692 1.01136 0.97854 1.21061 0.95563 0.96660 0.96569 0.90114 1.21799 1.00749 0.95783 1.01570 1.21852 0.80116 0.97747 0.94956 0.92748 1.86394 1.19987 1.82223 1.50185 1.22114 0.96487 1.00531 0.97354 0.94785 0.95695 0.93298 0.93355 0.92859 0.92031 0.91409 0.89913 0.93565 0.93041 0.91657 0.76332 0.93233 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.62 71.98 0.62 -5.63 16 2 C 0.05 2.25 1.89 -11.54 -0.02 2.23 16 3 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 4 C -0.52 -28.06 7.83 25.60 0.20 -27.86 16 5 H 0.05 2.90 6.71 -2.91 -0.02 2.88 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 C -0.06 -2.56 1.74 -10.79 -0.02 -2.58 16 13 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.12 -3.82 4.58 30.60 0.14 -3.68 16 15 C -0.10 -2.70 5.45 30.60 0.17 -2.53 16 16 C -0.08 -2.14 2.93 -10.80 -0.03 -2.17 16 17 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 18 C -0.14 -3.87 8.35 71.98 0.60 -3.27 16 19 C 0.11 3.34 3.15 30.59 0.10 3.43 16 20 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 21 O -0.58 -16.56 12.65 -148.98 -1.88 -18.44 16 22 C -0.13 -4.68 4.30 30.59 0.13 -4.55 16 23 H 0.03 1.43 6.43 -2.39 -0.02 1.42 16 24 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.05 2.67 6.07 -2.39 -0.01 2.65 16 26 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 27 H 0.05 1.82 6.43 -2.39 -0.02 1.81 16 28 H 0.06 2.01 6.43 -2.39 -0.02 2.00 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.44 4.81 -2.39 -0.01 1.42 16 32 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.39 8.53 9.08 -74.06 -0.67 7.86 16 35 H 0.05 1.96 6.43 -2.39 -0.02 1.94 16 36 H 0.05 2.07 6.62 -2.39 -0.02 2.05 16 Total: -1.00 -60.95 269.10 3.10 -57.85 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.38 Total: 14.26 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 2.33 Total: -45.79 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.24 Total: -53.78 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.88 Total: -18.44 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.95 3.10 -57.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307538067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.174 kcal (2) G-P(sol) polarization free energy of solvation -60.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds