Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47249 * 2 1 4 4 C 1.50700 * 109.47169 * 240.00800 * 2 1 3 5 5 H 1.08005 * 119.99941 * 267.93168 * 4 2 1 6 6 C 1.37875 * 120.00419 * 87.92423 * 4 2 1 7 7 N 1.31516 * 119.99889 * 353.40804 * 6 4 2 8 8 Si 1.86800 * 120.00260 * 173.41039 * 6 4 2 9 9 H 1.48496 * 109.47312 * 90.00258 * 8 6 4 10 10 H 1.48502 * 109.46820 * 209.99987 * 8 6 4 11 11 H 1.48498 * 109.46894 * 329.99715 * 8 6 4 12 12 C 1.53001 * 109.47450 * 120.00714 * 2 1 3 13 13 H 1.09001 * 109.47355 * 59.99942 * 12 2 1 14 14 C 1.53007 * 109.47249 * 179.97438 * 12 2 1 15 15 C 1.52992 * 109.47001 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47507 * 299.99867 * 15 14 12 17 17 H 1.09001 * 109.47600 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47372 * 300.00093 * 16 15 14 19 19 C 1.53004 * 109.47013 * 60.00403 * 16 15 14 20 20 H 1.08997 * 109.47437 * 59.99525 * 19 16 15 21 21 O 1.42895 * 109.47400 * 179.97438 * 19 16 15 22 22 C 1.53001 * 109.46904 * 299.99762 * 19 16 15 23 23 H 1.09002 * 109.47189 * 305.22046 * 1 2 3 24 24 H 1.08994 * 109.47412 * 65.22929 * 1 2 3 25 25 H 1.09004 * 109.47044 * 185.22928 * 1 2 3 26 26 H 0.97008 * 119.99493 * 354.60844 * 7 6 4 27 27 H 1.09002 * 109.47062 * 300.00151 * 14 12 2 28 28 H 1.09001 * 109.46942 * 59.99747 * 14 12 2 29 29 H 1.09001 * 109.47188 * 60.00254 * 15 14 12 30 30 H 1.09005 * 109.46935 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.46868 * 59.99950 * 18 16 15 32 32 H 1.09000 * 109.47342 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.46807 * 299.99957 * 18 16 15 34 34 H 0.96698 * 114.00770 * 179.97438 * 21 19 16 35 35 H 1.09001 * 109.47355 * 300.00051 * 22 19 16 36 36 H 1.08999 * 109.47354 * 179.97438 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.2441 -1.7687 -1.1945 6 6 2.2213 -0.0090 -2.4025 7 7 1.8424 1.2477 -2.4852 8 14 3.0157 -0.8437 -3.8728 9 1 1.9649 -1.4747 -4.7111 10 1 3.7511 0.1651 -4.6770 11 1 3.9625 -1.8849 -3.3989 12 6 2.0400 -0.7214 1.2491 13 1 1.6767 -1.7491 1.2491 14 6 3.5701 -0.7219 1.2488 15 6 4.0801 -1.4427 2.4982 16 6 3.5707 -0.7208 3.7472 17 1 3.9337 -1.2346 4.6373 18 6 4.0812 0.7215 3.7465 19 6 2.0407 -0.7203 3.7476 20 1 1.6770 -1.7478 3.7481 21 8 1.5649 -0.0466 4.9145 22 6 1.5306 0.0006 2.4982 23 1 -0.3634 0.5927 0.8395 24 1 -0.3634 0.4305 -0.9330 25 1 -0.3633 -1.0234 0.0937 26 1 1.3599 1.6581 -1.7505 27 1 3.9330 -1.2359 0.3587 28 1 3.9338 0.3056 1.2486 29 1 3.7164 -2.4703 2.4987 30 1 5.1701 -1.4427 2.4981 31 1 3.7178 1.2351 2.8564 32 1 3.7179 1.2360 4.6361 33 1 5.1712 0.7211 3.7462 34 1 0.6009 -0.0077 4.9808 35 1 1.8943 1.0282 2.4977 36 1 0.4406 0.0006 2.4982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307538069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = -93.509045 kcal Electronic energy + Delta-G solvation = -15182.005070 eV Core-core repulsion = 12857.344537 eV Total energy + Delta-G solvation = -2324.660533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31541 -35.88944 -34.37073 -31.78021 -29.38130 -28.72459 -26.05425 -24.72761 -22.31302 -21.68083 -19.55236 -18.26983 -17.04809 -16.41357 -15.50388 -14.29863 -14.19197 -13.72490 -13.37689 -13.17134 -12.64556 -12.35941 -12.16206 -11.67427 -11.55571 -11.42816 -11.14831 -10.74908 -10.66926 -10.56166 -10.27450 -10.09835 -10.03559 -9.79802 -9.69432 -9.42727 -8.91723 -8.39518 -8.20606 -6.29123 -3.98620 3.44776 3.47865 3.63425 4.42332 4.56789 5.04819 5.07596 5.37154 5.44759 5.65214 5.66829 5.75081 5.82384 5.91356 5.97464 6.18398 6.23894 6.27954 6.31308 6.48487 6.53687 6.58316 6.66499 6.67525 6.75998 6.97725 7.07123 7.14536 7.21882 7.51645 7.70914 7.83794 8.31948 8.51335 8.94337 9.72148 11.09296 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.041956 B = 0.008957 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.213232 B = 3125.202016 C = 3453.310414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 H 0.030 0.970 4 C -0.584 4.584 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 1.063 2.937 9 H -0.290 1.290 10 H -0.285 1.285 11 H -0.289 1.289 12 C -0.065 4.065 13 H 0.051 0.949 14 C -0.105 4.105 15 C -0.115 4.115 16 C -0.079 4.079 17 H 0.063 0.937 18 C -0.145 4.145 19 C 0.108 3.892 20 H 0.047 0.953 21 O -0.573 6.573 22 C -0.148 4.148 23 H 0.017 0.983 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.270 0.730 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.372 0.628 35 H 0.066 0.934 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -3.529 10.565 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.011 3.989 3 H 0.048 0.952 4 C -0.622 4.622 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.552 5.552 8 Si 0.892 3.108 9 H -0.217 1.217 10 H -0.211 1.211 11 H -0.215 1.215 12 C -0.083 4.083 13 H 0.070 0.930 14 C -0.142 4.142 15 C -0.153 4.153 16 C -0.098 4.098 17 H 0.082 0.918 18 C -0.202 4.202 19 C 0.050 3.950 20 H 0.065 0.935 21 O -0.378 6.378 22 C -0.186 4.186 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.085 0.915 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.572 -3.198 9.122 10.002 hybrid contribution -1.298 -0.419 1.382 1.942 sum 1.274 -3.616 10.504 11.182 Atomic orbital electron populations 1.21981 1.00105 0.98675 0.98603 1.18896 0.91137 0.96333 0.92538 0.95212 1.21905 1.47712 0.96552 0.96068 0.93503 1.25717 0.96375 0.95833 1.00598 1.70749 1.36584 1.12568 1.35310 0.83645 0.76414 0.75155 0.75624 1.21726 1.21050 1.21527 1.21050 0.94709 0.98595 0.93975 0.93010 1.21516 0.96005 1.00306 0.96363 1.21636 0.99843 0.99013 0.94802 1.21021 0.93183 0.97341 0.98230 0.91808 1.21838 0.99845 0.96121 1.02385 1.21888 0.94499 0.94213 0.84395 0.93475 1.86453 1.26138 1.80581 1.44639 1.22439 1.00189 1.00718 0.95211 0.96386 0.93791 0.94864 0.91854 0.90651 0.92517 0.92504 0.92178 0.91691 0.92614 0.93398 0.78163 0.91494 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.53 37.15 0.32 -2.75 16 2 C 0.03 0.71 1.52 -91.77 -0.14 0.57 16 3 H 0.03 0.79 7.00 -51.93 -0.36 0.43 16 4 C -0.58 -15.79 7.04 -34.44 -0.24 -16.04 16 5 H 0.05 1.27 7.82 -52.48 -0.41 0.86 16 6 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 7 N -0.92 -27.37 13.56 55.43 0.75 -26.62 16 8 Si 1.06 25.07 29.91 -169.99 -5.08 19.99 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.06 -1.29 1.77 -90.61 -0.16 -1.45 16 13 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.10 -1.99 4.68 -26.73 -0.13 -2.12 16 15 C -0.12 -1.80 5.45 -26.74 -0.15 -1.94 16 16 C -0.08 -1.19 2.94 -90.62 -0.27 -1.46 16 17 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.14 -2.17 8.35 37.16 0.31 -1.86 16 19 C 0.11 1.65 3.15 -26.73 -0.08 1.56 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 O -0.57 -8.18 12.65 -35.23 -0.45 -8.63 16 22 C -0.15 -2.54 4.20 -26.73 -0.11 -2.65 16 23 H 0.02 0.35 6.72 -51.93 -0.35 0.00 16 24 H 0.04 1.07 7.74 -51.93 -0.40 0.67 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.27 8.04 6.41 -40.82 -0.26 7.78 16 27 H 0.07 1.59 7.21 -51.93 -0.37 1.21 16 28 H 0.06 1.12 6.43 -51.93 -0.33 0.78 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.06 4.81 -51.93 -0.25 0.81 16 32 H 0.05 0.83 7.68 -51.93 -0.40 0.43 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.37 3.87 9.08 45.56 0.41 4.29 16 35 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 36 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -29.43 271.39 -6.59 -36.03 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.16 Total: 2.84 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -0.75 Total: -27.71 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.75 Total: -26.62 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.45 Total: -8.63 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.43 -6.59 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307538069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.484 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds