Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47249 * 2 1 4 4 C 1.50700 * 109.47169 * 240.00800 * 2 1 3 5 5 H 1.08005 * 119.99941 * 267.93168 * 4 2 1 6 6 C 1.37875 * 120.00419 * 87.92423 * 4 2 1 7 7 N 1.31516 * 119.99889 * 353.40804 * 6 4 2 8 8 Si 1.86800 * 120.00260 * 173.41039 * 6 4 2 9 9 H 1.48496 * 109.47312 * 90.00258 * 8 6 4 10 10 H 1.48502 * 109.46820 * 209.99987 * 8 6 4 11 11 H 1.48498 * 109.46894 * 329.99715 * 8 6 4 12 12 C 1.53001 * 109.47450 * 120.00714 * 2 1 3 13 13 H 1.09001 * 109.47355 * 59.99942 * 12 2 1 14 14 C 1.53007 * 109.47249 * 179.97438 * 12 2 1 15 15 C 1.52992 * 109.47001 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47507 * 299.99867 * 15 14 12 17 17 H 1.09001 * 109.47600 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47372 * 300.00093 * 16 15 14 19 19 C 1.53004 * 109.47013 * 60.00403 * 16 15 14 20 20 H 1.08997 * 109.47437 * 59.99525 * 19 16 15 21 21 O 1.42895 * 109.47400 * 179.97438 * 19 16 15 22 22 C 1.53001 * 109.46904 * 299.99762 * 19 16 15 23 23 H 1.09002 * 109.47189 * 305.22046 * 1 2 3 24 24 H 1.08994 * 109.47412 * 65.22929 * 1 2 3 25 25 H 1.09004 * 109.47044 * 185.22928 * 1 2 3 26 26 H 0.97008 * 119.99493 * 354.60844 * 7 6 4 27 27 H 1.09002 * 109.47062 * 300.00151 * 14 12 2 28 28 H 1.09001 * 109.46942 * 59.99747 * 14 12 2 29 29 H 1.09001 * 109.47188 * 60.00254 * 15 14 12 30 30 H 1.09005 * 109.46935 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.46868 * 59.99950 * 18 16 15 32 32 H 1.09000 * 109.47342 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.46807 * 299.99957 * 18 16 15 34 34 H 0.96698 * 114.00770 * 179.97438 * 21 19 16 35 35 H 1.09001 * 109.47355 * 300.00051 * 22 19 16 36 36 H 1.08999 * 109.47354 * 179.97438 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.2441 -1.7687 -1.1945 6 6 2.2213 -0.0090 -2.4025 7 7 1.8424 1.2477 -2.4852 8 14 3.0157 -0.8437 -3.8728 9 1 1.9649 -1.4747 -4.7111 10 1 3.7511 0.1651 -4.6770 11 1 3.9625 -1.8849 -3.3989 12 6 2.0400 -0.7214 1.2491 13 1 1.6767 -1.7491 1.2491 14 6 3.5701 -0.7219 1.2488 15 6 4.0801 -1.4427 2.4982 16 6 3.5707 -0.7208 3.7472 17 1 3.9337 -1.2346 4.6373 18 6 4.0812 0.7215 3.7465 19 6 2.0407 -0.7203 3.7476 20 1 1.6770 -1.7478 3.7481 21 8 1.5649 -0.0466 4.9145 22 6 1.5306 0.0006 2.4982 23 1 -0.3634 0.5927 0.8395 24 1 -0.3634 0.4305 -0.9330 25 1 -0.3633 -1.0234 0.0937 26 1 1.3599 1.6581 -1.7505 27 1 3.9330 -1.2359 0.3587 28 1 3.9338 0.3056 1.2486 29 1 3.7164 -2.4703 2.4987 30 1 5.1701 -1.4427 2.4981 31 1 3.7178 1.2351 2.8564 32 1 3.7179 1.2360 4.6361 33 1 5.1712 0.7211 3.7462 34 1 0.6009 -0.0077 4.9808 35 1 1.8943 1.0282 2.4977 36 1 0.4406 0.0006 2.4982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307538069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = -112.086695 kcal Electronic energy + Delta-G solvation = -15182.810657 eV Core-core repulsion = 12857.344537 eV Total energy + Delta-G solvation = -2325.466121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67852 -37.37718 -35.90439 -33.63293 -30.80563 -30.31808 -27.45189 -26.68770 -23.94992 -23.11097 -21.31041 -19.61780 -18.75815 -17.89901 -16.83554 -15.92916 -15.64548 -15.49676 -14.94702 -14.62870 -14.28674 -13.70162 -13.54054 -13.25496 -13.20842 -13.05331 -12.79008 -12.54771 -12.33847 -11.97267 -11.92196 -11.73618 -11.57223 -11.28789 -11.14187 -10.88055 -10.60446 -10.40550 -10.20642 -8.52774 -6.21479 1.52669 1.60531 1.77564 2.60140 3.25916 3.32943 3.75414 3.81356 4.14159 4.25548 4.33875 4.40882 4.51854 4.53080 4.57991 4.72521 4.79275 4.84485 4.92606 5.01296 5.06335 5.07494 5.20855 5.23159 5.25644 5.38302 5.42666 5.47424 5.63448 5.69747 5.86997 6.20283 6.32956 6.74453 6.89954 7.56437 8.86192 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.041956 B = 0.008957 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.213232 B = 3125.202016 C = 3453.310414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.024 3.976 3 H -0.003 1.003 4 C -0.585 4.585 5 H 0.043 0.957 6 C -0.035 4.035 7 N -0.945 5.945 8 Si 1.106 2.894 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.270 1.270 12 C -0.058 4.058 13 H 0.052 0.948 14 C -0.102 4.102 15 C -0.106 4.106 16 C -0.080 4.080 17 H 0.083 0.917 18 C -0.142 4.142 19 C 0.116 3.884 20 H 0.060 0.940 21 O -0.578 6.578 22 C -0.140 4.140 23 H 0.043 0.957 24 H 0.015 0.985 25 H 0.042 0.958 26 H 0.258 0.742 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.390 0.610 35 H 0.052 0.948 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -4.976 12.027 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.005 3.995 3 H 0.015 0.985 4 C -0.623 4.623 5 H 0.061 0.939 6 C -0.233 4.233 7 N -0.584 5.584 8 Si 0.929 3.071 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.195 1.195 12 C -0.077 4.077 13 H 0.070 0.930 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.099 4.099 17 H 0.101 0.899 18 C -0.199 4.199 19 C 0.057 3.943 20 H 0.077 0.923 21 O -0.386 6.386 22 C -0.177 4.177 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.071 0.929 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.862 -4.656 10.608 11.933 hybrid contribution -1.429 0.054 0.971 1.728 sum 1.433 -4.602 11.579 12.542 Atomic orbital electron populations 1.21824 0.98894 0.99453 0.98197 1.18918 0.92127 0.94666 0.93780 0.98511 1.22233 1.46566 0.96438 0.97082 0.93877 1.27045 0.96735 0.95805 1.03673 1.70867 1.38499 1.13800 1.35199 0.83078 0.76281 0.74727 0.72990 1.20425 1.21316 1.19541 1.20906 0.95332 0.98126 0.93361 0.93002 1.21426 0.95437 0.99649 0.97416 1.21555 1.00808 0.98992 0.93018 1.21056 0.93176 0.97200 0.98431 0.89905 1.21795 1.00686 0.96108 1.01308 1.21747 0.94634 0.94396 0.83476 0.92253 1.86424 1.28027 1.80460 1.43670 1.22329 1.00520 0.99828 0.95054 0.93818 0.96619 0.93871 0.93211 0.93261 0.94009 0.91410 0.90606 0.93866 0.92489 0.92121 0.76108 0.92902 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.53 71.98 0.61 -5.08 16 2 C 0.02 1.17 1.52 -11.54 -0.02 1.15 16 3 H 0.00 -0.19 7.00 -2.39 -0.02 -0.20 16 4 C -0.58 -32.05 7.04 25.60 0.18 -31.87 16 5 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 6 C -0.04 -2.01 5.45 84.65 0.46 -1.55 16 7 N -0.95 -58.14 13.56 21.45 0.29 -57.85 16 8 Si 1.11 50.66 29.91 68.60 2.05 52.71 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 C -0.06 -2.30 1.77 -10.79 -0.02 -2.32 16 13 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 14 C -0.10 -3.85 4.68 30.59 0.14 -3.70 16 15 C -0.11 -3.05 5.45 30.59 0.17 -2.89 16 16 C -0.08 -2.17 2.94 -10.80 -0.03 -2.20 16 17 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 18 C -0.14 -3.98 8.35 71.98 0.60 -3.38 16 19 C 0.12 3.19 3.15 30.60 0.10 3.28 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 O -0.58 -14.63 12.65 -148.98 -1.88 -16.51 16 22 C -0.14 -4.59 4.20 30.60 0.13 -4.46 16 23 H 0.04 1.71 6.72 -2.39 -0.02 1.69 16 24 H 0.01 0.75 7.74 -2.39 -0.02 0.73 16 25 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.26 16.01 6.41 -92.70 -0.59 15.42 16 27 H 0.05 2.08 7.21 -2.39 -0.02 2.07 16 28 H 0.04 1.68 6.43 -2.39 -0.02 1.66 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.39 4.81 -2.39 -0.01 1.38 16 32 H 0.06 1.57 7.68 -2.39 -0.02 1.55 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.39 6.80 9.08 -74.06 -0.67 6.12 16 35 H 0.05 1.89 6.43 -2.39 -0.02 1.88 16 36 H 0.06 2.03 6.55 -2.39 -0.02 2.01 16 Total: -1.00 -63.50 271.39 3.33 -60.17 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.55 Total: 14.52 kcal Atomic # 6 Polarization: -55.36 SS G_CDS: 2.32 Total: -53.04 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.29 Total: -57.85 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.88 Total: -16.51 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -63.50 3.33 -60.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307538069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.917 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds