Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52996 * 109.47102 * 294.99833 * 3 2 1 6 6 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 7 7 H 1.08995 * 110.27761 * 59.30090 * 6 3 2 8 8 C 1.54947 * 110.30699 * 181.39038 * 6 3 2 9 9 C 1.55416 * 100.89629 * 155.28475 * 8 6 3 10 10 C 1.54384 * 102.31051 * 325.99252 * 9 8 6 11 11 C 1.53001 * 109.83168 * 140.79281 * 10 9 8 12 12 C 1.50692 * 109.82883 * 261.77222 * 10 9 8 13 13 H 1.07999 * 120.00566 * 359.58097 * 12 10 9 14 14 C 1.37878 * 120.00015 * 179.58755 * 12 10 9 15 15 N 1.31514 * 120.00157 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00179 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47360 * 119.99897 * 16 14 12 19 19 H 1.48504 * 109.47052 * 240.00064 * 16 14 12 20 20 O 1.43246 * 107.58538 * 21.28214 * 10 9 8 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 25 25 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 26 26 H 1.08997 * 109.47474 * 60.00037 * 5 3 2 27 27 H 1.09002 * 109.46922 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46822 * 299.99923 * 5 3 2 29 29 H 1.09003 * 111.12469 * 273.27439 * 8 6 3 30 30 H 1.09004 * 111.12920 * 37.44276 * 8 6 3 31 31 H 1.08997 * 110.88703 * 207.75134 * 9 8 6 32 32 H 1.09006 * 110.75786 * 84.17156 * 9 8 6 33 33 H 1.08995 * 109.47032 * 300.41052 * 11 10 9 34 34 H 1.08995 * 109.47062 * 60.41643 * 11 10 9 35 35 H 1.09006 * 109.46573 * 180.41381 * 11 10 9 36 36 H 0.96996 * 120.00718 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1258 7 1 4.0128 0.8976 -0.7038 8 6 4.0994 2.8982 0.1629 9 6 5.4445 2.6974 0.9151 10 6 5.1055 1.5547 1.8963 11 6 6.2900 0.5919 2.0010 12 6 4.7863 2.1249 3.2542 13 1 4.8253 3.1922 3.4146 14 6 4.4444 1.2839 4.2920 15 7 4.3964 -0.0158 4.0967 16 14 4.0493 1.9906 5.9754 17 1 4.1752 3.4697 5.9333 18 1 2.6615 1.6220 6.3538 19 1 4.9980 1.4419 6.9776 20 8 3.9624 0.8642 1.3782 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5488 2.1252 -1.3970 27 1 1.9988 3.1541 -1.3075 28 1 2.0699 1.5875 -2.1491 29 1 4.2642 3.2820 -0.8440 30 1 3.4295 3.5491 0.7248 31 1 5.7267 3.6013 1.4548 32 1 6.2319 2.3949 0.2245 33 1 6.5088 0.1768 1.0173 34 1 7.1631 1.1290 2.3713 35 1 6.0416 -0.2161 2.6893 36 1 4.1563 -0.6074 4.8268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307582956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = -71.182565 kcal Electronic energy + Delta-G solvation = -15255.089901 eV Core-core repulsion = 12931.397517 eV Total energy + Delta-G solvation = -2323.692384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.60982 -35.52224 -32.62910 -30.95824 -30.18366 -28.32100 -25.31671 -24.93694 -23.15554 -20.54751 -19.59718 -18.98571 -16.67576 -15.30231 -14.65033 -14.38789 -14.08565 -13.51676 -13.00309 -12.67248 -12.28405 -12.08522 -11.96161 -11.53100 -11.42514 -11.18931 -11.11512 -10.84213 -10.56951 -10.42438 -10.34182 -10.25915 -9.97669 -9.91183 -9.55733 -9.26847 -9.01427 -8.42136 -7.72770 -5.87882 -4.03335 3.32350 3.40700 3.43875 4.47492 4.98668 5.26443 5.43721 5.45206 5.64933 5.71442 5.83957 5.86300 5.92578 5.96681 6.11129 6.26178 6.28466 6.36429 6.42790 6.48154 6.55047 6.70020 6.77504 6.84896 6.87340 6.98546 7.03290 7.08065 7.22308 7.46590 7.84991 8.17329 8.46158 8.74401 9.16023 9.67286 11.14057 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.011255 C = 0.009616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.194957 B = 2487.278717 C = 2911.237322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.086 4.086 4 H 0.073 0.927 5 C -0.144 4.144 6 C 0.082 3.918 7 H 0.041 0.959 8 C -0.143 4.143 9 C -0.144 4.144 10 C 0.228 3.772 11 C -0.140 4.140 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.081 3.919 15 N -0.860 5.860 16 Si 0.884 3.116 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.347 6.347 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 2.300 -8.023 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.202 4.202 6 C 0.023 3.977 7 H 0.059 0.941 8 C -0.181 4.181 9 C -0.182 4.182 10 C 0.191 3.809 11 C -0.198 4.198 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.124 4.124 15 N -0.497 5.497 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 O -0.267 6.267 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.654 1.949 -7.829 8.856 hybrid contribution -0.118 0.563 0.828 1.009 sum -3.772 2.512 -7.000 8.339 Atomic orbital electron populations 1.21815 0.96971 1.00743 1.01169 1.21463 0.94531 0.96794 1.02437 1.21227 0.95541 0.96269 0.97452 0.90848 1.21851 1.00622 1.00248 0.97456 1.22662 0.93013 0.92086 0.89912 0.94109 1.23173 0.98010 0.97943 0.98961 1.23230 0.95750 1.01035 0.98145 1.19622 0.83568 0.86688 0.91061 1.22002 0.97012 1.01911 0.98896 1.21265 1.48760 0.92876 0.93696 0.92510 1.24981 0.94289 0.94785 0.98338 1.69969 1.46219 1.02176 1.31356 0.86684 0.78033 0.79357 0.84712 1.19845 1.20998 1.21055 1.88737 1.48862 1.56803 1.32280 0.93486 0.92964 0.93299 0.93077 0.90391 0.92877 0.92915 0.93238 0.92592 0.91188 0.91564 0.93307 0.97099 0.94676 0.89238 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.11 -1.99 5.35 -26.73 -0.14 -2.13 16 3 C -0.09 -1.54 2.16 -90.62 -0.20 -1.74 16 4 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 5 C -0.14 -2.05 8.74 37.16 0.32 -1.72 16 6 C 0.08 1.69 2.96 -25.70 -0.08 1.61 16 7 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 8 C -0.14 -2.75 5.49 -24.42 -0.13 -2.88 16 9 C -0.14 -3.08 6.08 -24.72 -0.15 -3.23 16 10 C 0.23 5.81 0.82 -91.05 -0.07 5.74 16 11 C -0.14 -3.52 8.52 37.16 0.32 -3.20 16 12 C -0.53 -14.70 8.23 -34.44 -0.28 -14.99 16 13 H 0.06 1.57 7.48 -52.49 -0.39 1.17 16 14 C 0.08 2.27 5.26 -17.82 -0.09 2.17 16 15 N -0.86 -24.98 10.93 55.43 0.61 -24.37 16 16 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 O -0.35 -8.95 9.26 -35.23 -0.33 -9.27 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 26 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 27 H 0.05 0.72 7.23 -51.93 -0.38 0.34 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 30 H 0.07 1.37 8.06 -51.93 -0.42 0.96 16 31 H 0.07 1.40 7.60 -51.93 -0.39 1.00 16 32 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -29.15 280.89 -6.98 -36.13 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.32 Total: -1.00 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -0.15 Total: -22.17 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.61 Total: -24.37 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.33 Total: -9.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.15 -6.98 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307582956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.053 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds