Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.09000 * 109.47314 * 54.99967 * 3 2 1 5 5 C 1.52996 * 109.47102 * 294.99833 * 3 2 1 6 6 C 1.52997 * 109.46646 * 174.99857 * 3 2 1 7 7 H 1.08995 * 110.27761 * 59.30090 * 6 3 2 8 8 C 1.54947 * 110.30699 * 181.39038 * 6 3 2 9 9 C 1.55416 * 100.89629 * 155.28475 * 8 6 3 10 10 C 1.54384 * 102.31051 * 325.99252 * 9 8 6 11 11 C 1.53001 * 109.83168 * 140.79281 * 10 9 8 12 12 C 1.50692 * 109.82883 * 261.77222 * 10 9 8 13 13 H 1.07999 * 120.00566 * 359.58097 * 12 10 9 14 14 C 1.37878 * 120.00015 * 179.58755 * 12 10 9 15 15 N 1.31514 * 120.00157 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00179 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46958 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47360 * 119.99897 * 16 14 12 19 19 H 1.48504 * 109.47052 * 240.00064 * 16 14 12 20 20 O 1.43246 * 107.58538 * 21.28214 * 10 9 8 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 25 25 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 26 26 H 1.08997 * 109.47474 * 60.00037 * 5 3 2 27 27 H 1.09002 * 109.46922 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46822 * 299.99923 * 5 3 2 29 29 H 1.09003 * 111.12469 * 273.27439 * 8 6 3 30 30 H 1.09004 * 111.12920 * 37.44276 * 8 6 3 31 31 H 1.08997 * 110.88703 * 207.75134 * 9 8 6 32 32 H 1.09006 * 110.75786 * 84.17156 * 9 8 6 33 33 H 1.08995 * 109.47032 * 300.41052 * 11 10 9 34 34 H 1.08995 * 109.47062 * 60.41643 * 11 10 9 35 35 H 1.09006 * 109.46573 * 180.41381 * 11 10 9 36 36 H 0.96996 * 120.00718 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5647 1.4444 0.1258 7 1 4.0128 0.8976 -0.7038 8 6 4.0994 2.8982 0.1629 9 6 5.4445 2.6974 0.9151 10 6 5.1055 1.5547 1.8963 11 6 6.2900 0.5919 2.0010 12 6 4.7863 2.1249 3.2542 13 1 4.8253 3.1922 3.4146 14 6 4.4444 1.2839 4.2920 15 7 4.3964 -0.0158 4.0967 16 14 4.0493 1.9906 5.9754 17 1 4.1752 3.4697 5.9333 18 1 2.6615 1.6220 6.3538 19 1 4.9980 1.4419 6.9776 20 8 3.9624 0.8642 1.3782 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5488 2.1252 -1.3970 27 1 1.9988 3.1541 -1.3075 28 1 2.0699 1.5875 -2.1491 29 1 4.2642 3.2820 -0.8440 30 1 3.4295 3.5491 0.7248 31 1 5.7267 3.6013 1.4548 32 1 6.2319 2.3949 0.2245 33 1 6.5088 0.1768 1.0173 34 1 7.1631 1.1290 2.3713 35 1 6.0416 -0.2161 2.6893 36 1 4.1563 -0.6074 4.8268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307582956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = -87.532585 kcal Electronic energy + Delta-G solvation = -15255.798891 eV Core-core repulsion = 12931.397517 eV Total energy + Delta-G solvation = -2324.401374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32131 -37.02415 -34.62661 -32.70406 -31.86430 -29.80744 -27.29860 -26.50263 -24.69868 -22.07523 -21.37400 -20.57947 -18.68245 -16.97007 -16.55822 -15.99931 -15.56592 -15.18867 -14.64673 -14.32783 -13.86797 -13.58681 -13.37377 -13.22353 -13.09213 -12.80382 -12.65856 -12.57350 -12.31464 -12.17695 -12.05585 -11.96663 -11.61523 -11.39682 -11.18738 -10.89242 -10.84894 -10.54609 -9.63524 -7.99177 -6.21573 1.38540 1.40781 1.51131 2.43966 3.13624 3.59941 3.86692 4.01427 4.19316 4.29208 4.33387 4.52270 4.56409 4.74161 4.76472 4.82256 4.83379 4.94485 5.02920 5.06657 5.10842 5.16753 5.18542 5.24209 5.30754 5.37108 5.43631 5.44911 5.63722 5.66897 5.76157 6.13170 6.39301 6.72265 7.23293 7.54351 9.01430 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.011255 C = 0.009616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.194957 B = 2487.278717 C = 2911.237322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.084 4.084 4 H 0.047 0.953 5 C -0.136 4.136 6 C 0.070 3.930 7 H 0.049 0.951 8 C -0.132 4.132 9 C -0.141 4.141 10 C 0.212 3.788 11 C -0.135 4.135 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.890 5.890 16 Si 0.945 3.055 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.279 1.279 20 O -0.382 6.382 21 H 0.057 0.943 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 3.459 -9.562 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.103 4.103 4 H 0.066 0.934 5 C -0.193 4.193 6 C 0.012 3.988 7 H 0.067 0.933 8 C -0.169 4.169 9 C -0.179 4.179 10 C 0.174 3.826 11 C -0.193 4.193 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.170 4.170 15 N -0.527 5.527 16 Si 0.771 3.229 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.204 1.204 20 O -0.303 6.303 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.300 3.120 -9.375 10.775 hybrid contribution 0.103 0.174 1.269 1.285 sum -4.197 3.294 -8.106 9.704 Atomic orbital electron populations 1.21764 0.94599 1.01776 1.01920 1.21411 0.96645 0.96251 1.00753 1.21207 0.93607 0.96609 0.98827 0.93436 1.21787 1.01959 1.00293 0.95226 1.22990 0.94881 0.92786 0.88121 0.93287 1.23125 0.96246 0.96929 1.00600 1.23154 0.97532 0.99376 0.97815 1.19727 0.83575 0.87961 0.91340 1.21902 0.97377 1.01105 0.98880 1.21623 1.48503 0.92697 0.95454 0.93036 1.25708 0.94390 0.95098 1.01807 1.70119 1.47201 1.03236 1.32182 0.85730 0.77613 0.78920 0.80634 1.19120 1.21091 1.20433 1.88675 1.49046 1.57829 1.34705 0.92410 0.93963 0.90702 0.91786 0.95007 0.91049 0.92077 0.91838 0.88741 0.92055 0.91677 0.91511 0.95550 0.94112 0.92384 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.11 -3.85 5.35 30.60 0.16 -3.69 16 3 C -0.08 -2.90 2.16 -10.79 -0.02 -2.92 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.14 -3.37 8.74 71.98 0.63 -2.74 16 6 C 0.07 2.81 2.96 31.26 0.09 2.91 16 7 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 8 C -0.13 -4.76 5.49 32.09 0.18 -4.58 16 9 C -0.14 -5.83 6.08 31.90 0.19 -5.64 16 10 C 0.21 10.84 0.82 -11.07 -0.01 10.83 16 11 C -0.13 -6.82 8.52 71.98 0.61 -6.21 16 12 C -0.54 -30.73 8.23 25.60 0.21 -30.52 16 13 H 0.05 2.87 7.48 -2.91 -0.02 2.84 16 14 C 0.03 1.81 5.26 84.65 0.45 2.26 16 15 N -0.89 -53.19 10.93 21.45 0.23 -52.95 16 16 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 O -0.38 -20.01 9.26 -148.98 -1.38 -21.39 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.66 6.56 -2.39 -0.02 1.64 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.35 7.66 -2.39 -0.02 1.33 16 26 H 0.07 1.53 6.56 -2.39 -0.02 1.51 16 27 H 0.06 1.43 7.23 -2.39 -0.02 1.41 16 28 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 30 H 0.06 2.31 8.06 -2.38 -0.02 2.29 16 31 H 0.06 2.66 7.60 -2.39 -0.02 2.65 16 32 H 0.07 2.48 7.85 -2.38 -0.02 2.46 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 3.29 6.06 -2.38 -0.01 3.28 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -63.86 280.89 5.09 -58.77 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.02 Total: 12.32 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 3.19 Total: -43.51 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.23 Total: -52.95 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.38 Total: -21.39 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.86 5.09 -58.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307582956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.760 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds