Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.47635 * 111.00269 * 298.89023 * 10 9 7 12 12 C 1.50813 * 108.05585 * 150.34848 * 11 10 9 13 13 C 1.53825 * 111.62231 * 95.05869 * 12 11 10 14 14 C 1.54177 * 111.96685 * 319.04334 * 13 12 11 15 15 C 1.50751 * 112.60916 * 318.48772 * 14 13 12 16 16 H 1.09001 * 109.54812 * 333.15470 * 15 14 13 17 17 C 1.53007 * 109.54175 * 212.88380 * 15 14 13 18 18 N 1.46898 * 109.47139 * 65.45713 * 17 15 14 19 19 C 1.39782 * 111.00019 * 169.99934 * 10 9 7 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09002 * 109.74610 * 269.99287 * 11 10 9 24 24 H 1.08996 * 109.74348 * 30.70810 * 11 10 9 25 25 H 1.09000 * 109.04933 * 334.50566 * 12 11 10 26 26 H 1.08994 * 109.04932 * 215.61197 * 12 11 10 27 27 H 1.08997 * 108.98261 * 198.40381 * 13 12 11 28 28 H 1.08999 * 108.98283 * 79.68509 * 13 12 11 29 29 H 1.09005 * 108.85140 * 197.68416 * 14 13 12 30 30 H 1.08995 * 108.85444 * 79.30033 * 14 13 12 31 31 H 1.09005 * 109.46429 * 185.45550 * 17 15 14 32 32 H 1.08996 * 109.47120 * 305.44974 * 17 15 14 33 33 H 1.00900 * 110.99860 * 56.04301 * 18 17 15 34 34 H 1.00900 * 110.99573 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.01702 * 309.71961 * 19 10 9 36 36 H 1.08999 * 109.01818 * 68.53489 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 3.0500 -3.5820 -1.2182 12 6 4.3847 -4.1941 -0.8742 13 6 4.4351 -5.6871 -1.2411 14 6 3.1192 -6.4112 -0.8931 15 6 2.5583 -5.9853 0.4398 16 1 3.3686 -5.6451 1.0846 17 6 1.8422 -7.1680 1.0952 18 7 2.8200 -8.2169 1.4140 19 6 1.5552 -4.8322 0.2186 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.5758 -4.1561 -2.0142 24 1 3.1902 -2.5504 -1.5408 25 1 4.5611 -4.0845 0.1959 26 1 5.1685 -3.6673 -1.4184 27 1 5.2537 -6.1584 -0.6971 28 1 4.6206 -5.7833 -2.3108 29 1 3.3036 -7.4853 -0.8707 30 1 2.3841 -6.1981 -1.6690 31 1 1.3548 -6.8350 2.0116 32 1 1.0939 -7.5650 0.4093 33 1 3.5602 -7.8561 1.9971 34 1 2.3714 -9.0094 1.8485 35 1 0.9222 -4.7377 1.1009 36 1 0.9293 -5.0660 -0.6426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307726282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -10.190551 kcal Electronic energy + Delta-G solvation = -14850.735576 eV Core-core repulsion = 12561.980755 eV Total energy + Delta-G solvation = -2288.754821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97363 -35.36291 -33.63248 -32.31741 -30.89274 -27.55307 -25.95378 -24.35023 -23.16781 -21.17720 -19.94379 -18.79260 -16.33123 -15.80513 -15.06932 -14.84521 -14.60732 -14.38136 -14.15801 -13.24513 -13.02310 -12.86467 -12.14419 -11.89087 -11.62690 -11.47461 -11.00065 -10.83566 -10.72524 -10.44251 -10.25122 -10.20329 -9.82228 -9.73825 -9.52466 -9.12795 -8.65038 -8.41994 -7.03552 -6.00453 -4.01430 3.32851 3.39047 3.43530 4.43255 4.57791 4.91703 5.25245 5.30445 5.32294 5.35433 5.57119 5.68348 5.69373 5.85700 5.93496 6.13970 6.19561 6.27066 6.33988 6.43048 6.50154 6.67086 6.69088 6.76068 6.93170 7.02059 7.13976 7.39850 7.42583 7.47490 7.88229 8.23489 8.30818 8.78913 9.06812 9.62687 11.10381 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045858 B = 0.007558 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.431703 B = 3703.986061 C = 4070.554339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.198 3.802 10 N -0.556 5.556 11 C 0.072 3.928 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.084 4.084 16 H 0.077 0.923 17 C 0.067 3.933 18 N -0.849 5.849 19 C 0.089 3.911 20 H 0.261 0.739 21 H 0.027 0.973 22 H -0.011 1.011 23 H 0.022 0.978 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.339 0.661 34 H 0.336 0.664 35 H 0.059 0.941 36 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -12.334 0.415 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.280 5.280 11 C -0.055 4.055 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.103 4.103 16 H 0.095 0.905 17 C -0.064 4.064 18 N -0.378 5.378 19 C -0.043 4.043 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.007 0.993 23 H 0.041 0.959 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.077 0.923 36 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 5.706 -12.188 -0.012 13.458 hybrid contribution -0.525 0.997 0.360 1.183 sum 5.181 -11.191 0.348 12.337 Atomic orbital electron populations 1.69964 1.06075 1.26704 1.51191 1.24997 0.94846 0.99296 0.95543 0.86518 0.79827 0.83193 0.78016 1.20758 1.21303 1.19782 1.21209 0.93523 0.90013 1.49726 0.91768 1.19673 0.89866 0.87223 0.95868 1.58825 1.27673 1.03473 1.38073 1.21672 0.92528 1.01155 0.90170 1.21466 0.97651 0.94069 1.02298 1.21893 0.97218 0.96044 0.99922 1.21363 0.96688 1.00218 0.96332 1.21085 0.98417 0.93534 0.97270 0.90457 1.21813 0.94092 0.91938 0.98573 1.58716 1.15071 1.10409 1.53633 1.20818 0.94227 0.90079 0.99140 0.92979 0.95472 0.99291 0.95946 0.89603 0.91055 0.93021 0.92988 0.93201 0.91232 0.93300 0.95527 0.91410 0.84863 0.85240 0.92254 0.97732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.27 8.08 -34.44 -0.28 -14.55 16 8 H 0.06 1.79 7.14 -52.49 -0.37 1.41 16 9 C 0.20 5.25 4.73 -4.98 -0.02 5.22 16 10 N -0.56 -12.18 3.96 -241.45 -0.96 -13.13 16 11 C 0.07 1.44 5.06 -4.52 -0.02 1.42 16 12 C -0.12 -1.96 5.41 -27.40 -0.15 -2.11 16 13 C -0.11 -1.63 5.91 -25.69 -0.15 -1.78 16 14 C -0.11 -1.59 4.81 -27.24 -0.13 -1.73 16 15 C -0.08 -1.27 2.06 -91.00 -0.19 -1.46 16 16 H 0.08 1.26 7.11 -51.93 -0.37 0.89 16 17 C 0.07 0.85 6.04 -3.82 -0.02 0.83 16 18 N -0.85 -9.16 8.84 -10.37 -0.09 -9.25 16 19 C 0.09 1.67 4.32 -6.75 -0.03 1.64 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.77 7.83 -51.93 -0.41 0.36 16 22 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 23 H 0.02 0.44 6.66 -51.93 -0.35 0.09 16 24 H 0.09 1.91 6.29 -51.93 -0.33 1.58 16 25 H 0.07 1.28 7.26 -51.93 -0.38 0.90 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.98 7.11 -51.93 -0.37 0.61 16 30 H 0.05 0.77 6.58 -51.93 -0.34 0.43 16 31 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.34 3.42 8.99 -39.29 -0.35 3.07 16 34 H 0.34 2.94 9.08 -39.29 -0.36 2.58 16 35 H 0.06 1.13 7.61 -51.93 -0.40 0.74 16 36 H 0.00 0.09 7.54 -51.93 -0.39 -0.30 16 LS Contribution 275.10 15.07 4.15 4.15 Total: -1.00 -29.46 275.10 -8.35 -37.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.07 Total: 1.01 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.09 Total: -11.07 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.31 Total: -48.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.46 -8.35 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307726282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.628 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds