Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.47635 * 111.00269 * 298.89023 * 10 9 7 12 12 C 1.50813 * 108.05585 * 150.34848 * 11 10 9 13 13 C 1.53825 * 111.62231 * 95.05869 * 12 11 10 14 14 C 1.54177 * 111.96685 * 319.04334 * 13 12 11 15 15 C 1.50751 * 112.60916 * 318.48772 * 14 13 12 16 16 H 1.09001 * 109.54812 * 333.15470 * 15 14 13 17 17 C 1.53007 * 109.54175 * 212.88380 * 15 14 13 18 18 N 1.46898 * 109.47139 * 65.45713 * 17 15 14 19 19 C 1.39782 * 111.00019 * 169.99934 * 10 9 7 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.09002 * 109.74610 * 269.99287 * 11 10 9 24 24 H 1.08996 * 109.74348 * 30.70810 * 11 10 9 25 25 H 1.09000 * 109.04933 * 334.50566 * 12 11 10 26 26 H 1.08994 * 109.04932 * 215.61197 * 12 11 10 27 27 H 1.08997 * 108.98261 * 198.40381 * 13 12 11 28 28 H 1.08999 * 108.98283 * 79.68509 * 13 12 11 29 29 H 1.09005 * 108.85140 * 197.68416 * 14 13 12 30 30 H 1.08995 * 108.85444 * 79.30033 * 14 13 12 31 31 H 1.09005 * 109.46429 * 185.45550 * 17 15 14 32 32 H 1.08996 * 109.47120 * 305.44974 * 17 15 14 33 33 H 1.00900 * 110.99860 * 56.04301 * 18 17 15 34 34 H 1.00900 * 110.99573 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.01702 * 309.71961 * 19 10 9 36 36 H 1.08999 * 109.01818 * 68.53489 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 3.0500 -3.5820 -1.2182 12 6 4.3847 -4.1941 -0.8742 13 6 4.4351 -5.6871 -1.2411 14 6 3.1192 -6.4112 -0.8931 15 6 2.5583 -5.9853 0.4398 16 1 3.3686 -5.6451 1.0846 17 6 1.8422 -7.1680 1.0952 18 7 2.8200 -8.2169 1.4140 19 6 1.5552 -4.8322 0.2186 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.5758 -4.1561 -2.0142 24 1 3.1902 -2.5504 -1.5408 25 1 4.5611 -4.0845 0.1959 26 1 5.1685 -3.6673 -1.4184 27 1 5.2537 -6.1584 -0.6971 28 1 4.6206 -5.7833 -2.3108 29 1 3.3036 -7.4853 -0.8707 30 1 2.3841 -6.1981 -1.6690 31 1 1.3548 -6.8350 2.0116 32 1 1.0939 -7.5650 0.4093 33 1 3.5602 -7.8561 1.9971 34 1 2.3714 -9.0094 1.8485 35 1 0.9222 -4.7377 1.1009 36 1 0.9293 -5.0660 -0.6426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307726282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = -31.102095 kcal Electronic energy + Delta-G solvation = -14851.642369 eV Core-core repulsion = 12561.980755 eV Total energy + Delta-G solvation = -2289.661614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47346 -36.77130 -35.12733 -34.26926 -32.16780 -29.48107 -27.43324 -25.81962 -24.83231 -22.75729 -21.47549 -20.11726 -18.45790 -17.19802 -16.60054 -16.28873 -16.15879 -15.76565 -15.53901 -14.79889 -14.47861 -14.24516 -13.99660 -13.40195 -13.24361 -12.97575 -12.72781 -12.66879 -12.33712 -12.12008 -11.93340 -11.58776 -11.36858 -11.17658 -11.10479 -10.98033 -10.62404 -9.54966 -8.87144 -8.20561 -6.30768 1.40881 1.42414 1.54197 2.40369 3.11479 3.23965 3.68383 3.95719 4.04669 4.08392 4.28019 4.38839 4.44467 4.57754 4.67596 4.72636 4.80260 4.89062 4.92024 5.07202 5.09960 5.19474 5.26754 5.35738 5.43554 5.48346 5.60528 5.63430 5.67826 6.09274 6.24761 6.40432 6.67059 6.85780 6.96021 7.39041 8.90683 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045858 B = 0.007558 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.431703 B = 3703.986061 C = 4070.554339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.212 3.788 10 N -0.557 5.557 11 C 0.073 3.927 12 C -0.110 4.110 13 C -0.108 4.108 14 C -0.104 4.104 15 C -0.070 4.070 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.847 5.847 19 C 0.084 3.916 20 H 0.264 0.736 21 H 0.000 1.000 22 H -0.043 1.043 23 H 0.025 0.975 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.346 0.654 34 H 0.351 0.649 35 H 0.049 0.951 36 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 -13.149 0.430 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.281 5.281 11 C -0.053 4.053 12 C -0.148 4.148 13 C -0.145 4.145 14 C -0.142 4.142 15 C -0.090 4.090 16 H 0.090 0.910 17 C -0.057 4.057 18 N -0.377 5.377 19 C -0.047 4.047 20 H 0.073 0.927 21 H 0.018 0.982 22 H -0.025 1.025 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.068 0.932 36 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 7.601 -13.040 0.005 15.094 hybrid contribution -1.155 1.206 0.350 1.706 sum 6.446 -11.834 0.356 13.480 Atomic orbital electron populations 1.70099 1.07834 1.27899 1.51914 1.25949 0.95740 1.03308 0.94821 0.85360 0.78565 0.78117 0.78454 1.19756 1.20776 1.18787 1.21481 0.93674 0.90942 1.49812 0.91632 1.19349 0.89983 0.89070 0.93018 1.58855 1.26621 1.03406 1.39185 1.21690 0.94077 1.00057 0.89515 1.21371 0.95591 0.96001 1.01793 1.21860 0.97592 0.93956 1.01103 1.21334 0.96531 1.01085 0.95240 1.20936 0.97209 0.92834 0.97994 0.90950 1.21645 0.94216 0.91521 0.98354 1.58646 1.14743 1.10112 1.54240 1.20944 0.95230 0.90229 0.98273 0.92706 0.98168 1.02547 0.95692 0.92220 0.92122 0.91501 0.91005 0.91858 0.89766 0.94629 0.95647 0.91292 0.84170 0.83605 0.93209 0.98584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.52 -30.06 8.08 25.60 0.21 -29.86 16 8 H 0.07 3.69 7.14 -2.91 -0.02 3.67 16 9 C 0.21 11.72 4.73 85.56 0.40 12.13 16 10 N -0.56 -24.98 3.96 -917.82 -3.64 -28.62 16 11 C 0.07 2.96 5.06 85.45 0.43 3.39 16 12 C -0.11 -3.50 5.41 30.16 0.16 -3.34 16 13 C -0.11 -2.79 5.91 31.27 0.18 -2.61 16 14 C -0.10 -2.84 4.81 30.26 0.15 -2.70 16 15 C -0.07 -2.06 2.06 -11.04 -0.02 -2.08 16 16 H 0.07 2.23 7.11 -2.39 -0.02 2.21 16 17 C 0.07 1.76 6.04 86.31 0.52 2.28 16 18 N -0.85 -15.92 8.84 -186.71 -1.65 -17.57 16 19 C 0.08 3.22 4.32 88.07 0.38 3.60 16 20 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.00 0.01 7.83 -2.39 -0.02 -0.01 16 22 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 23 H 0.02 0.98 6.66 -2.39 -0.02 0.97 16 24 H 0.06 2.70 6.29 -2.39 -0.02 2.68 16 25 H 0.06 2.08 7.26 -2.39 -0.02 2.06 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 2.10 7.11 -2.38 -0.02 2.08 16 30 H 0.03 1.06 6.58 -2.39 -0.02 1.05 16 31 H 0.03 0.61 8.05 -2.38 -0.02 0.59 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.35 5.98 8.99 -89.69 -0.81 5.17 16 34 H 0.35 5.13 9.08 -89.69 -0.81 4.31 16 35 H 0.05 1.97 7.61 -2.39 -0.02 1.95 16 36 H 0.00 -0.15 7.54 -2.39 -0.02 -0.17 16 Total: -1.00 -64.00 275.10 -0.66 -64.65 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.56 Total: 10.67 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 2.88 Total: -18.74 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -5.00 Total: -103.34 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.00 -0.66 -64.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307726282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.553 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds