Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 N 1.46906 * 109.47061 * 119.99906 * 2 1 3 5 5 C 1.46905 * 110.99834 * 299.99802 * 4 2 1 6 6 C 1.50701 * 109.46882 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00239 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99618 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00170 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46949 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47305 * 119.99691 * 10 8 6 13 13 H 1.48494 * 109.46940 * 240.00029 * 10 8 6 14 14 C 1.52999 * 109.47323 * 239.99690 * 2 1 3 15 15 H 1.08999 * 110.64472 * 67.19901 * 14 2 1 16 16 C 1.54601 * 110.72291 * 304.05424 * 14 2 1 17 17 C 1.53994 * 105.13739 * 219.68275 * 16 14 2 18 18 N 1.47903 * 107.06267 * 358.77562 * 17 16 14 19 19 C 1.48737 * 105.94117 * 25.19833 * 18 17 16 20 20 H 1.09001 * 109.46777 * 306.37094 * 1 2 3 21 21 H 1.09003 * 109.46825 * 66.36315 * 1 2 3 22 22 H 1.08993 * 109.47329 * 186.36806 * 1 2 3 23 23 H 1.09003 * 109.47306 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47263 * 299.99572 * 3 2 1 25 25 H 1.08992 * 109.47448 * 59.99790 * 3 2 1 26 26 H 1.00906 * 110.99579 * 63.95006 * 4 2 1 27 27 H 1.08996 * 109.46731 * 300.00005 * 5 4 2 28 28 H 1.09008 * 109.46682 * 59.99890 * 5 4 2 29 29 H 0.96997 * 120.00047 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.30554 * 338.59527 * 16 14 2 31 31 H 1.08995 * 110.31506 * 100.76735 * 16 14 2 32 32 H 1.09006 * 109.91720 * 118.12723 * 17 16 14 33 33 H 1.09000 * 109.91849 * 239.41983 * 17 16 14 34 34 H 1.00901 * 110.99801 * 264.82212 * 18 17 16 35 35 H 1.08992 * 110.83628 * 202.57960 * 19 18 17 36 36 H 1.09003 * 110.58276 * 79.38862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5486 -0.0263 2.4211 6 6 2.0692 -0.7636 3.6280 7 1 2.6884 -1.6392 3.5003 8 6 1.7550 -0.3203 4.8952 9 7 1.0014 0.7463 5.0507 10 14 2.4008 -1.2337 6.3911 11 1 3.2194 -2.3913 5.9490 12 1 3.2378 -0.3180 7.2071 13 1 1.2583 -1.7186 7.2063 14 6 2.0400 -0.7213 -1.2492 15 1 1.7955 -0.1541 -2.1472 16 6 1.4590 -2.1517 -1.3305 17 6 2.6197 -3.0291 -1.8347 18 7 3.7769 -2.1343 -2.0535 19 6 3.5668 -0.9677 -1.1551 20 1 -0.3633 0.6094 0.8275 21 1 -0.3633 0.4120 -0.9415 22 1 -0.3633 -1.0212 0.1140 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.7501 -1.6649 1.1910 27 1 1.9121 1.0011 2.4378 28 1 0.4587 -0.0265 2.4378 29 1 0.7807 1.0584 5.9421 30 1 1.1337 -2.4844 -0.3449 31 1 0.6276 -2.1829 -2.0347 32 1 2.8685 -3.7817 -1.0864 33 1 2.3408 -3.5113 -2.7716 34 1 3.8293 -1.8401 -3.0172 35 1 4.1194 -0.0989 -1.5122 36 1 3.8544 -1.2145 -0.1330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308099559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -6.162002 kcal Electronic energy + Delta-G solvation = -14955.529470 eV Core-core repulsion = 12666.949339 eV Total energy + Delta-G solvation = -2288.580130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29042 -36.06500 -32.90222 -30.49722 -29.32123 -27.99244 -26.64750 -25.99450 -22.33573 -21.40399 -20.68492 -18.05379 -16.60344 -16.44513 -15.16916 -14.66277 -14.32800 -13.69797 -13.40366 -13.23179 -12.62159 -12.50801 -12.27535 -11.94979 -11.64463 -11.40677 -11.34595 -11.07691 -10.88034 -10.68993 -10.61300 -10.27386 -10.18089 -10.14673 -9.64583 -9.08878 -8.49028 -8.38405 -7.18626 -6.01199 -4.02042 3.32037 3.39513 3.44847 4.44064 4.47020 4.89226 4.99084 5.08806 5.34027 5.36369 5.49140 5.58882 5.70165 5.78706 5.83212 5.87939 6.05652 6.09186 6.20366 6.25268 6.33543 6.42885 6.46706 6.74059 6.75395 6.82285 6.97237 7.35316 7.49842 7.54890 7.82669 8.17415 8.45313 8.66963 9.08104 9.62642 11.09859 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037079 B = 0.008098 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.962641 B = 3457.020466 C = 3803.509427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 C -0.136 4.136 4 N -0.675 5.675 5 C 0.190 3.810 6 C -0.511 4.511 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C -0.108 4.108 15 H 0.065 0.935 16 C -0.148 4.148 17 C 0.045 3.955 18 N -0.679 5.679 19 C 0.051 3.949 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.327 0.673 27 H 0.032 0.968 28 H -0.010 1.010 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.326 0.674 35 H 0.064 0.936 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -2.743 -13.162 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.026 3.974 3 C -0.193 4.193 4 N -0.306 5.306 5 C 0.064 3.936 6 C -0.550 4.550 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.128 4.128 15 H 0.083 0.917 16 C -0.187 4.187 17 C -0.085 4.085 18 N -0.304 5.304 19 C -0.078 4.078 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.007 0.993 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.548 -2.688 -12.597 12.973 hybrid contribution -1.625 -0.112 0.466 1.694 sum -0.077 -2.800 -12.131 12.451 Atomic orbital electron populations 1.22553 0.98129 1.01605 1.01266 1.20699 0.91375 0.94277 0.91017 1.21842 1.01478 0.94990 1.01024 1.60864 1.62775 1.05381 1.01599 1.19632 0.93350 0.95333 0.85300 1.21263 1.30927 1.12456 0.90376 0.92057 1.24972 0.95302 0.95211 0.99104 1.69966 1.37584 1.23807 1.22496 0.86470 0.78591 0.79824 0.82700 1.19662 1.21045 1.21200 1.22728 0.97386 0.95219 0.97501 0.91664 1.22860 0.98313 0.95584 1.01915 1.22690 0.89057 0.96405 1.00371 1.62878 1.41390 1.16577 1.09578 1.23281 0.93184 0.91485 0.99810 0.91860 0.93708 0.93152 0.92221 0.93836 0.91797 0.85521 0.94998 0.99258 0.93066 0.90759 0.92293 0.90673 0.92472 0.85995 0.91734 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 7.60 37.16 0.28 -2.67 16 2 C 0.12 2.02 0.42 -131.60 -0.05 1.96 16 3 C -0.14 -2.29 8.12 37.16 0.30 -1.99 16 4 N -0.67 -13.89 4.73 -101.21 -0.48 -14.37 16 5 C 0.19 4.85 4.66 -4.97 -0.02 4.83 16 6 C -0.51 -14.42 9.32 -34.44 -0.32 -14.74 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.11 -1.53 2.45 -88.76 -0.22 -1.75 16 15 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.15 -1.96 5.39 -25.37 -0.14 -2.10 16 17 C 0.04 0.56 7.52 -2.75 -0.02 0.54 16 18 N -0.68 -8.98 7.52 -109.93 -0.83 -9.81 16 19 C 0.05 0.75 6.29 -1.78 -0.01 0.74 16 20 H 0.06 1.20 6.76 -51.93 -0.35 0.85 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.83 7.05 -51.93 -0.37 0.46 16 23 H 0.06 1.00 7.60 -51.93 -0.39 0.61 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.22 6.40 -51.93 -0.33 0.89 16 26 H 0.33 6.66 6.87 -39.29 -0.27 6.39 16 27 H 0.03 0.88 6.30 -51.93 -0.33 0.55 16 28 H -0.01 -0.28 6.45 -51.92 -0.33 -0.61 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.07 1.09 5.65 -51.93 -0.29 0.80 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.33 3.66 8.91 -39.29 -0.35 3.31 16 35 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.11 1.93 6.92 -51.93 -0.36 1.57 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -28.99 275.61 -7.62 -36.61 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.88 Total: 6.39 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.30 Total: -13.70 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.57 Total: -50.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.99 -7.62 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308099559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds