Wall clock time and date at job start Mon Mar 30 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47395 * 2 1 4 4 N 1.46906 * 109.47061 * 119.99906 * 2 1 3 5 5 C 1.46905 * 110.99834 * 299.99802 * 4 2 1 6 6 C 1.50701 * 109.46882 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00239 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99618 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00170 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46949 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47305 * 119.99691 * 10 8 6 13 13 H 1.48494 * 109.46940 * 240.00029 * 10 8 6 14 14 C 1.52999 * 109.47323 * 239.99690 * 2 1 3 15 15 H 1.08999 * 110.64472 * 67.19901 * 14 2 1 16 16 C 1.54601 * 110.72291 * 304.05424 * 14 2 1 17 17 C 1.53994 * 105.13739 * 219.68275 * 16 14 2 18 18 N 1.47903 * 107.06267 * 358.77562 * 17 16 14 19 19 C 1.48737 * 105.94117 * 25.19833 * 18 17 16 20 20 H 1.09001 * 109.46777 * 306.37094 * 1 2 3 21 21 H 1.09003 * 109.46825 * 66.36315 * 1 2 3 22 22 H 1.08993 * 109.47329 * 186.36806 * 1 2 3 23 23 H 1.09003 * 109.47306 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47263 * 299.99572 * 3 2 1 25 25 H 1.08992 * 109.47448 * 59.99790 * 3 2 1 26 26 H 1.00906 * 110.99579 * 63.95006 * 4 2 1 27 27 H 1.08996 * 109.46731 * 300.00005 * 5 4 2 28 28 H 1.09008 * 109.46682 * 59.99890 * 5 4 2 29 29 H 0.96997 * 120.00047 * 180.02562 * 9 8 6 30 30 H 1.08997 * 110.30554 * 338.59527 * 16 14 2 31 31 H 1.08995 * 110.31506 * 100.76735 * 16 14 2 32 32 H 1.09006 * 109.91720 * 118.12723 * 17 16 14 33 33 H 1.09000 * 109.91849 * 239.41983 * 17 16 14 34 34 H 1.00901 * 110.99801 * 264.82212 * 18 17 16 35 35 H 1.08992 * 110.83628 * 202.57960 * 19 18 17 36 36 H 1.09003 * 110.58276 * 79.38862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5486 -0.0263 2.4211 6 6 2.0692 -0.7636 3.6280 7 1 2.6884 -1.6392 3.5003 8 6 1.7550 -0.3203 4.8952 9 7 1.0014 0.7463 5.0507 10 14 2.4008 -1.2337 6.3911 11 1 3.2194 -2.3913 5.9490 12 1 3.2378 -0.3180 7.2071 13 1 1.2583 -1.7186 7.2063 14 6 2.0400 -0.7213 -1.2492 15 1 1.7955 -0.1541 -2.1472 16 6 1.4590 -2.1517 -1.3305 17 6 2.6197 -3.0291 -1.8347 18 7 3.7769 -2.1343 -2.0535 19 6 3.5668 -0.9677 -1.1551 20 1 -0.3633 0.6094 0.8275 21 1 -0.3633 0.4120 -0.9415 22 1 -0.3633 -1.0212 0.1140 23 1 3.1301 1.4425 0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.7501 -1.6649 1.1910 27 1 1.9121 1.0011 2.4378 28 1 0.4587 -0.0265 2.4378 29 1 0.7807 1.0584 5.9421 30 1 1.1337 -2.4844 -0.3449 31 1 0.6276 -2.1829 -2.0347 32 1 2.8685 -3.7817 -1.0864 33 1 2.3408 -3.5113 -2.7716 34 1 3.8293 -1.8401 -3.0172 35 1 4.1194 -0.0989 -1.5122 36 1 3.8544 -1.2145 -0.1330 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308099559.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:32 Heat of formation + Delta-G solvation = -27.235057 kcal Electronic energy + Delta-G solvation = -14956.443266 eV Core-core repulsion = 12666.949339 eV Total energy + Delta-G solvation = -2289.493926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56235 -37.45385 -34.96262 -32.25090 -30.45066 -29.20291 -28.16352 -27.84540 -24.19864 -22.63712 -21.91229 -19.52762 -18.56956 -17.51572 -16.90757 -16.32243 -15.89704 -15.26752 -14.62820 -14.50546 -14.18140 -14.04239 -13.79008 -13.63228 -13.02368 -12.93353 -12.88224 -12.64345 -12.43193 -12.31361 -12.07064 -11.93435 -11.49926 -11.46474 -11.18100 -11.10655 -10.63151 -9.49726 -8.91553 -8.20809 -6.30268 1.39350 1.40274 1.53852 2.40162 3.12531 3.37846 3.59807 3.74174 3.89839 4.15014 4.28120 4.35682 4.45911 4.61170 4.66683 4.72904 4.79382 4.89484 4.90374 5.01232 5.05583 5.14525 5.21304 5.28848 5.34351 5.41563 5.49070 5.58069 5.66174 5.88521 6.09526 6.55687 6.62553 6.81159 6.96398 7.40281 8.90514 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037079 B = 0.008098 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.962641 B = 3457.020466 C = 3803.509427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.114 3.886 3 C -0.133 4.133 4 N -0.671 5.671 5 C 0.210 3.790 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.278 1.278 14 C -0.098 4.098 15 H 0.090 0.910 16 C -0.145 4.145 17 C 0.046 3.954 18 N -0.683 5.683 19 C 0.055 3.945 20 H 0.030 0.970 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.328 0.672 27 H 0.006 0.994 28 H -0.036 1.036 29 H 0.263 0.737 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -3.642 -14.666 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 C -0.190 4.190 4 N -0.302 5.302 5 C 0.082 3.918 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.792 3.208 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.204 1.204 14 C -0.119 4.119 15 H 0.108 0.892 16 C -0.184 4.184 17 C -0.083 4.083 18 N -0.311 5.311 19 C -0.075 4.075 20 H 0.049 0.951 21 H 0.093 0.907 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.146 0.854 27 H 0.024 0.976 28 H -0.018 1.018 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.880 -3.596 -14.133 14.704 hybrid contribution -1.727 0.185 0.868 1.942 sum 0.154 -3.411 -13.265 13.697 Atomic orbital electron populations 1.22462 0.97712 1.01208 1.01473 1.20871 0.91751 0.94405 0.90756 1.21817 1.01336 0.94917 1.00946 1.60748 1.62826 1.05363 1.01300 1.19207 0.91453 0.94091 0.87040 1.21636 1.31036 1.12650 0.91750 0.92270 1.25883 0.95395 0.96005 1.02345 1.70090 1.38670 1.25269 1.23418 0.85364 0.78147 0.78642 0.78629 1.18857 1.20458 1.20398 1.22659 0.97011 0.95766 0.96417 0.89210 1.22837 0.99236 0.94870 1.01445 1.22685 0.88386 0.95935 1.01329 1.62771 1.41858 1.16020 1.10403 1.23089 0.93560 0.92376 0.98456 0.95078 0.90724 0.93097 0.92396 0.90631 0.95092 0.85372 0.97626 1.01802 0.92787 0.92760 0.90261 0.91976 0.89801 0.84220 0.90721 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 7.60 71.98 0.55 -5.02 16 2 C 0.11 3.81 0.42 3.52 0.00 3.81 16 3 C -0.13 -4.43 8.12 71.98 0.58 -3.85 16 4 N -0.67 -28.24 4.73 -474.12 -2.24 -30.48 16 5 C 0.21 11.15 4.66 85.56 0.40 11.55 16 6 C -0.53 -30.74 9.32 25.60 0.24 -30.50 16 7 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 10 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C -0.10 -2.56 2.45 -9.59 -0.02 -2.58 16 15 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.14 -3.49 5.39 31.48 0.17 -3.32 16 17 C 0.05 1.04 7.52 86.45 0.65 1.69 16 18 N -0.68 -16.38 7.52 -501.69 -3.77 -20.15 16 19 C 0.05 1.51 6.29 86.61 0.54 2.05 16 20 H 0.03 1.20 6.76 -2.39 -0.02 1.18 16 21 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 22 H 0.05 1.64 7.05 -2.39 -0.02 1.62 16 23 H 0.06 1.92 7.60 -2.39 -0.02 1.90 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.03 1.22 6.40 -2.39 -0.02 1.20 16 26 H 0.33 13.64 6.87 -89.69 -0.62 13.02 16 27 H 0.01 0.33 6.30 -2.39 -0.02 0.32 16 28 H -0.04 -2.04 6.45 -2.38 -0.02 -2.06 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.05 1.54 5.65 -2.39 -0.01 1.52 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.34 6.50 8.91 -89.69 -0.80 5.70 16 35 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.07 2.61 6.92 -2.39 -0.02 2.59 16 Total: -1.00 -63.40 275.61 -0.48 -63.88 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.35 Total: 21.94 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.57 Total: -25.61 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -5.73 Total: -107.37 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.40 -0.48 -63.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308099559.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.645 kcal (2) G-P(sol) polarization free energy of solvation -63.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds