Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47340 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47269 * 55.00435 * 4 3 2 6 6 C 1.52998 * 109.47285 * 295.00153 * 4 3 2 7 7 C 1.53004 * 109.47035 * 174.99909 * 4 3 2 8 8 H 1.08996 * 110.27565 * 304.36300 * 7 4 3 9 9 C 1.54947 * 110.30929 * 182.16549 * 7 4 3 10 10 C 1.55297 * 100.94388 * 204.64273 * 9 7 4 11 11 C 1.54388 * 102.25043 * 34.13310 * 10 9 7 12 12 H 1.09004 * 109.90643 * 98.20561 * 11 10 9 13 13 C 1.50706 * 109.82757 * 219.12675 * 11 10 9 14 14 H 1.07999 * 120.00193 * 359.59626 * 13 11 10 15 15 C 1.37879 * 119.99398 * 179.58706 * 13 11 10 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 11 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 O 1.43229 * 107.59226 * 338.64425 * 11 10 9 22 22 H 1.09006 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46557 * 299.99373 * 1 2 3 24 24 H 1.08992 * 109.47370 * 59.99757 * 1 2 3 25 25 H 1.09003 * 109.46649 * 240.00161 * 2 1 3 26 26 H 1.08998 * 109.47450 * 120.00684 * 2 1 3 27 27 H 1.08998 * 109.46939 * 59.99995 * 3 2 1 28 28 H 1.09005 * 109.47018 * 300.00776 * 3 2 1 29 29 H 1.08999 * 109.46767 * 59.99834 * 6 4 3 30 30 H 1.09000 * 109.47477 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.47197 * 300.00325 * 6 4 3 32 32 H 1.09005 * 111.12245 * 322.56560 * 9 7 4 33 33 H 1.09005 * 111.12384 * 86.71817 * 9 7 4 34 34 H 1.09000 * 110.85122 * 275.94507 * 10 9 7 35 35 H 1.08997 * 110.85028 * 152.32072 * 10 9 7 36 36 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8532 -0.8427 6 6 4.0806 0.8326 1.3063 7 6 4.0800 2.8795 -0.1264 8 1 3.6615 3.3524 -1.0147 9 6 5.6283 2.8976 -0.1838 10 6 5.9259 4.3303 0.3364 11 6 4.7967 4.5457 1.3671 12 1 5.1680 4.3441 2.3719 13 6 4.2921 5.9633 1.2837 14 1 4.7299 6.6517 0.5760 15 6 3.2713 6.3813 2.1109 16 7 2.8306 7.6183 2.0378 17 14 2.5143 5.1909 3.3354 18 1 1.3743 4.4839 2.6984 19 1 3.5364 4.2006 3.7594 20 1 2.0305 5.9419 4.5216 21 8 3.7393 3.6339 1.0476 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3632 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.7173 -0.1911 1.3958 30 1 5.1706 0.8330 1.3061 31 1 3.7176 1.4218 2.1484 32 1 6.0548 2.1431 0.4774 33 1 5.9851 2.7687 -1.2056 34 1 5.8574 5.0585 -0.4717 35 1 6.9032 4.3733 0.8171 36 1 2.1122 7.9123 2.6195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308176728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -93.781734 kcal Electronic energy + Delta-G solvation = -15010.998676 eV Core-core repulsion = 12686.326318 eV Total energy + Delta-G solvation = -2324.672358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46461 -37.20597 -34.74238 -33.25044 -32.61827 -29.98473 -27.58799 -26.51015 -23.79541 -22.10420 -21.78532 -20.45821 -18.92622 -17.49172 -16.93132 -16.26076 -15.88393 -15.26616 -14.82243 -14.73465 -14.34830 -14.27365 -13.66998 -13.26585 -13.04292 -12.86716 -12.79083 -12.40918 -12.33876 -12.23712 -11.97851 -11.76767 -11.68102 -11.39722 -11.28792 -11.17595 -10.98580 -10.80638 -9.92295 -8.36349 -6.47495 1.32257 1.40650 1.49901 2.36180 2.90009 3.45532 3.75613 3.88812 4.07370 4.15670 4.27521 4.34579 4.36721 4.53067 4.57484 4.68063 4.75474 4.83095 4.95991 4.97658 5.04891 5.08351 5.10625 5.14921 5.20943 5.32504 5.35590 5.42392 5.47495 5.56298 5.58598 5.70180 6.15637 6.53536 6.76362 7.29856 8.78569 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.011348 C = 0.008999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.037648 B = 2466.862795 C = 3110.569524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.114 4.114 4 C -0.082 4.082 5 H 0.102 0.898 6 C -0.141 4.141 7 C 0.073 3.927 8 H 0.043 0.957 9 C -0.139 4.139 10 C -0.134 4.134 11 C 0.166 3.834 12 H 0.035 0.965 13 C -0.537 4.537 14 H 0.038 0.962 15 C 0.027 3.973 16 N -0.943 5.943 17 Si 0.964 3.036 18 H -0.280 1.280 19 H -0.252 1.252 20 H -0.294 1.294 21 O -0.404 6.404 22 H 0.069 0.931 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -17.778 -3.997 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.100 4.100 5 H 0.120 0.880 6 C -0.198 4.198 7 C 0.015 3.985 8 H 0.061 0.939 9 C -0.177 4.177 10 C -0.172 4.172 11 C 0.110 3.890 12 H 0.053 0.947 13 C -0.575 4.575 14 H 0.056 0.944 15 C -0.172 4.172 16 N -0.583 5.583 17 Si 0.790 3.210 18 H -0.206 1.206 19 H -0.176 1.176 20 H -0.221 1.221 21 O -0.325 6.325 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.130 -17.680 -3.817 18.123 hybrid contribution -0.502 0.694 0.438 0.962 sum 0.627 -16.986 -3.379 17.330 Atomic orbital electron populations 1.21795 0.96023 1.02056 1.01273 1.21555 0.95791 0.95422 1.02732 1.21590 0.95309 0.97587 1.00685 1.21288 0.95338 0.93583 0.99788 0.87986 1.21813 1.01157 1.00343 0.96514 1.23064 0.94742 0.92188 0.88468 0.93909 1.23311 0.95036 0.96336 1.02974 1.22950 0.98694 0.97030 0.98496 1.20637 0.86053 0.87203 0.95144 0.94741 1.21731 1.19346 0.95934 1.20468 0.94357 1.25867 0.96327 0.96195 0.98826 1.70071 1.28863 1.18538 1.40866 0.85414 0.79449 0.78694 0.77418 1.20555 1.17590 1.22106 1.88332 1.44971 1.53895 1.45336 0.91218 0.94095 0.92955 0.90507 0.91439 0.94757 0.92977 0.90898 0.91800 0.94917 0.88977 0.88584 0.92677 0.89987 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.12 -2.59 5.69 30.60 0.17 -2.41 16 3 C -0.11 -3.36 4.55 30.59 0.14 -3.22 16 4 C -0.08 -2.29 2.31 -10.79 -0.02 -2.31 16 5 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.14 -3.78 8.53 71.98 0.61 -3.17 16 7 C 0.07 2.61 3.14 31.26 0.10 2.71 16 8 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 9 C -0.14 -4.22 6.47 32.05 0.21 -4.01 16 10 C -0.13 -5.18 6.53 31.85 0.21 -4.97 16 11 C 0.17 8.08 2.82 30.32 0.09 8.17 16 12 H 0.03 1.72 7.17 -2.38 -0.02 1.70 16 13 C -0.54 -32.18 9.33 25.60 0.24 -31.94 16 14 H 0.04 2.49 7.77 -2.91 -0.02 2.47 16 15 C 0.03 1.65 5.47 84.66 0.46 2.11 16 16 N -0.94 -61.18 13.96 21.45 0.30 -60.88 16 17 Si 0.96 49.86 26.28 68.60 1.80 51.67 16 18 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.25 -12.35 6.53 99.48 0.65 -11.70 16 20 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 21 O -0.40 -18.89 7.41 -148.98 -1.10 -19.99 16 22 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.41 6.57 -2.39 -0.02 1.40 16 27 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.07 1.57 6.57 -2.39 -0.02 1.55 16 30 H 0.06 1.54 6.22 -2.39 -0.01 1.52 16 31 H 0.03 1.07 7.57 -2.39 -0.02 1.06 16 32 H 0.09 2.43 6.01 -2.38 -0.01 2.42 16 33 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.05 2.27 7.66 -2.39 -0.02 2.25 16 35 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 Total: -1.00 -69.13 278.27 4.88 -64.26 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.96 Total: 6.54 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 2.92 Total: -41.60 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.30 Total: -60.88 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.10 Total: -19.99 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.80 Total: 51.67 kcal Total: -69.13 4.88 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308176728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.523 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds