Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47385 * 54.99993 * 4 3 2 6 6 C 1.53004 * 109.47185 * 294.99592 * 4 3 2 7 7 C 1.53005 * 109.47123 * 174.99805 * 4 3 2 8 8 H 1.09002 * 110.32694 * 57.74939 * 7 4 3 9 9 C 1.54475 * 110.37322 * 180.02562 * 7 4 3 10 10 C 1.54509 * 104.06475 * 142.81132 * 9 7 4 11 11 C 1.54479 * 104.05891 * 359.97438 * 10 9 7 12 12 H 1.08994 * 110.37279 * 94.96455 * 11 10 9 13 13 C 1.50702 * 110.36956 * 217.18909 * 11 10 9 14 14 H 1.08002 * 120.00299 * 358.45638 * 13 11 10 15 15 C 1.37884 * 119.99942 * 178.17197 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 O 1.44425 * 104.90221 * 336.07569 * 11 10 9 22 22 H 1.09003 * 109.47340 * 299.99524 * 1 2 3 23 23 H 1.08999 * 109.47126 * 60.00367 * 1 2 3 24 24 H 1.09001 * 109.46748 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47417 * 239.99697 * 2 1 3 26 26 H 1.09009 * 109.47187 * 119.99557 * 2 1 3 27 27 H 1.08999 * 109.46751 * 59.99531 * 3 2 1 28 28 H 1.08999 * 109.46785 * 299.99842 * 3 2 1 29 29 H 1.09000 * 109.47071 * 180.02562 * 6 4 3 30 30 H 1.08995 * 109.47286 * 300.00461 * 6 4 3 31 31 H 1.09001 * 109.46942 * 60.00021 * 6 4 3 32 32 H 1.08999 * 110.51258 * 24.16319 * 9 7 4 33 33 H 1.09001 * 110.62387 * 261.51450 * 9 7 4 34 34 H 1.08997 * 110.50984 * 241.35796 * 10 9 7 35 35 H 1.08999 * 110.62868 * 118.69659 * 10 9 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 1 3.6922 3.4916 0.6880 9 6 5.6245 2.9037 -0.1298 10 6 5.9803 4.0202 -1.1369 11 6 4.6086 4.5381 -1.6232 12 1 4.3028 5.4071 -1.0408 13 6 4.6682 4.8845 -3.0887 14 1 5.5957 4.7777 -3.6316 15 6 3.5371 5.3323 -3.7378 16 7 2.4077 5.4623 -3.0767 17 14 3.6092 5.7543 -5.5560 18 1 4.9854 5.5233 -6.0637 19 1 2.6559 4.8941 -6.3020 20 1 3.2433 7.1807 -5.7480 21 8 3.6975 3.4393 -1.4030 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 5.1705 0.8332 1.3062 30 1 3.7175 1.4220 2.1485 31 1 3.7172 -0.1910 1.3961 32 1 6.0207 1.9456 -0.4661 33 1 6.0069 3.1474 0.8614 34 1 6.5524 3.6140 -1.9710 35 1 6.5375 4.8176 -0.6451 36 1 1.6120 5.7777 -3.5333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308176732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -81.084032 kcal Electronic energy + Delta-G solvation = -14766.583210 eV Core-core repulsion = 12442.461466 eV Total energy + Delta-G solvation = -2324.121744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.47448 -35.78427 -32.72393 -31.78511 -30.66784 -27.74725 -26.24453 -24.55399 -22.35578 -20.67611 -19.90175 -19.21234 -16.57628 -15.38251 -14.92053 -14.49842 -14.37126 -13.93531 -13.60502 -12.71394 -12.67923 -12.43463 -12.05449 -11.80091 -11.62547 -11.40092 -11.09045 -10.91391 -10.82234 -10.53351 -10.38948 -10.29223 -10.02108 -9.92887 -9.56896 -9.46776 -9.01335 -8.55890 -7.98972 -5.97855 -4.09717 3.31893 3.39553 3.43452 4.45006 4.99347 5.08077 5.26703 5.37461 5.46055 5.61370 5.63022 5.75744 5.80342 5.83999 5.98912 6.04293 6.12013 6.16525 6.22219 6.31047 6.37914 6.42453 6.48390 6.55356 6.72318 6.76834 6.81261 6.89000 6.99823 7.02788 7.57108 7.92451 8.28563 8.61565 9.02581 9.60331 11.10116 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.009140 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.276234 B = 3062.588500 C = 3822.426896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.081 4.081 5 H 0.071 0.929 6 C -0.145 4.145 7 C 0.070 3.930 8 H 0.045 0.955 9 C -0.147 4.147 10 C -0.148 4.148 11 C 0.205 3.795 12 H 0.023 0.977 13 C -0.528 4.528 14 H 0.063 0.937 15 C 0.076 3.924 16 N -0.864 5.864 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.347 6.347 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -8.195 7.239 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.202 4.202 7 C 0.011 3.989 8 H 0.063 0.937 9 C -0.185 4.185 10 C -0.186 4.186 11 C 0.150 3.850 12 H 0.041 0.959 13 C -0.566 4.566 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.500 5.500 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.266 6.266 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.337 -8.209 7.085 10.849 hybrid contribution 0.145 0.320 -0.792 0.866 sum 0.483 -7.889 6.294 10.104 Atomic orbital electron populations 1.21769 0.96431 1.00766 1.01901 1.21585 0.95392 0.97814 1.01327 1.21573 0.94813 0.95674 1.02815 1.21122 0.95631 0.95738 0.97500 0.91091 1.21856 1.00728 1.00191 0.97431 1.22777 0.92346 0.93231 0.90579 0.93703 1.22943 0.97381 0.99407 0.98789 1.23041 1.01105 0.96778 0.97652 1.20482 0.82492 0.85894 0.96181 0.95923 1.21094 0.96330 1.44882 0.94266 0.91892 1.25087 0.95423 0.94304 0.98149 1.70052 1.00120 1.43996 1.35855 0.86569 0.78218 0.77920 0.85444 1.19649 1.20868 1.20919 1.89499 1.56708 1.48104 1.32254 0.93056 0.92576 0.93443 0.92354 0.92514 0.92755 0.90402 0.92873 0.93054 0.92788 0.92103 0.92652 0.91952 0.92967 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.71 5.69 -26.73 -0.15 -1.86 16 3 C -0.11 -1.88 4.64 -26.73 -0.12 -2.00 16 4 C -0.08 -1.40 2.07 -90.62 -0.19 -1.58 16 5 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 6 C -0.14 -1.97 8.72 37.16 0.32 -1.65 16 7 C 0.07 1.44 2.81 -25.95 -0.07 1.36 16 8 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 9 C -0.15 -2.75 5.54 -25.16 -0.14 -2.89 16 10 C -0.15 -3.21 6.62 -25.16 -0.17 -3.37 16 11 C 0.21 5.47 3.08 -27.11 -0.08 5.39 16 12 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 13 C -0.53 -15.22 8.78 -34.44 -0.30 -15.52 16 14 H 0.06 1.76 7.58 -52.49 -0.40 1.37 16 15 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 16 N -0.86 -26.07 12.99 55.43 0.72 -25.35 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 O -0.35 -9.17 10.14 -35.23 -0.36 -9.53 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.70 6.57 -51.92 -0.34 0.36 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 29 H 0.05 0.69 7.11 -51.93 -0.37 0.32 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 32 H 0.06 1.06 7.65 -51.93 -0.40 0.67 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.36 7.71 -51.93 -0.40 0.96 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -30.35 286.04 -7.41 -37.77 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.43 Total: -2.33 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.63 Total: -21.59 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.72 Total: -25.35 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.36 Total: -9.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.35 -7.41 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308176732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.319 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds