Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 C 1.52995 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47440 * 55.00108 * 4 3 2 6 6 C 1.52999 * 109.47283 * 294.99891 * 4 3 2 7 7 C 1.53009 * 109.47040 * 174.99710 * 4 3 2 8 8 H 1.08994 * 109.89410 * 59.47644 * 7 4 3 9 9 C 1.54385 * 109.82784 * 180.41265 * 7 4 3 10 10 C 1.55417 * 102.30592 * 140.79884 * 9 7 4 11 11 C 1.54950 * 100.89324 * 325.98663 * 10 9 7 12 12 H 1.08990 * 110.31006 * 277.36126 * 11 10 9 13 13 C 1.50706 * 110.30527 * 155.28469 * 11 10 9 14 14 H 1.07999 * 120.00193 * 1.39967 * 13 11 10 15 15 C 1.37879 * 119.99398 * 181.39047 * 13 11 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 60.00420 * 17 15 13 21 21 O 1.43240 * 109.82581 * 298.54394 * 7 4 3 22 22 H 1.09000 * 109.47080 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47397 * 300.00082 * 1 2 3 24 24 H 1.09002 * 109.47086 * 60.00361 * 1 2 3 25 25 H 1.08998 * 109.47495 * 239.99370 * 2 1 3 26 26 H 1.09005 * 109.46690 * 119.99298 * 2 1 3 27 27 H 1.08998 * 109.47504 * 59.99376 * 3 2 1 28 28 H 1.09002 * 109.46898 * 299.99754 * 3 2 1 29 29 H 1.08997 * 109.47515 * 59.99591 * 6 4 3 30 30 H 1.09003 * 109.47196 * 180.02562 * 6 4 3 31 31 H 1.09009 * 109.46769 * 299.99777 * 6 4 3 32 32 H 1.09000 * 110.84591 * 259.05789 * 9 7 4 33 33 H 1.08997 * 110.84513 * 22.47980 * 9 7 4 34 34 H 1.09002 * 111.21107 * 208.06386 * 10 9 7 35 35 H 1.08995 * 111.08442 * 83.86682 * 10 9 7 36 36 H 0.97000 * 119.99706 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0795 0.8332 1.3083 7 6 4.0800 2.8797 -0.1252 8 1 3.7125 3.4780 0.7085 9 6 5.6238 2.8884 -0.1358 10 6 5.9416 3.9811 -1.1942 11 6 4.7660 3.7811 -2.1836 12 1 4.9868 2.9671 -2.8739 13 6 4.5010 5.0544 -2.9451 14 1 5.1162 5.9250 -2.7724 15 6 3.4730 5.1076 -3.8625 16 7 2.7236 4.0475 -4.0726 17 14 3.1449 6.6855 -4.8069 18 1 1.9943 6.4835 -5.7237 19 1 2.8301 7.7779 -3.8515 20 1 4.3491 7.0497 -5.5959 21 8 3.6354 3.4463 -1.3633 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.7161 -0.1905 1.3980 30 1 5.1695 0.8336 1.3089 31 1 3.7157 1.4229 2.1499 32 1 6.0168 3.1682 0.8416 33 1 6.0150 1.9197 -0.4466 34 1 6.8995 3.7935 -1.6794 35 1 5.9164 4.9762 -0.7502 36 1 2.8942 3.2280 -3.5825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308176737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -87.334996 kcal Electronic energy + Delta-G solvation = -14868.595476 eV Core-core repulsion = 12544.202669 eV Total energy + Delta-G solvation = -2324.392806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75094 -35.84816 -32.89791 -31.79173 -30.87319 -27.54431 -26.28920 -24.27181 -22.34311 -20.73902 -20.28819 -19.35553 -16.96997 -15.64641 -14.98641 -14.74549 -14.08577 -13.68012 -13.49539 -13.11360 -12.94284 -12.32859 -12.03035 -11.85842 -11.69623 -11.33747 -11.17470 -10.88194 -10.72231 -10.60812 -10.45535 -10.40192 -10.08603 -10.03508 -9.77986 -9.63350 -8.77908 -8.43039 -7.89342 -6.30940 -4.08221 3.46329 3.49293 3.67526 4.56984 4.89825 5.02971 5.22534 5.34469 5.42622 5.51383 5.56165 5.61947 5.70833 5.73588 5.90769 5.98222 6.07387 6.12062 6.15291 6.19458 6.28305 6.34609 6.42048 6.44594 6.53693 6.60005 6.67086 6.74972 6.91715 6.95437 7.40220 8.15232 8.37890 8.66227 8.93888 9.74606 11.10852 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.009300 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.450326 B = 3010.099280 C = 3800.297200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.100 4.100 5 H 0.067 0.933 6 C -0.145 4.145 7 C 0.082 3.918 8 H 0.057 0.943 9 C -0.151 4.151 10 C -0.140 4.140 11 C 0.192 3.808 12 H 0.017 0.983 13 C -0.609 4.609 14 H 0.054 0.946 15 C 0.031 3.969 16 N -0.891 5.891 17 Si 1.068 2.932 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.288 1.288 21 O -0.371 6.371 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -6.165 8.786 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.118 4.118 5 H 0.085 0.915 6 C -0.202 4.202 7 C 0.023 3.977 8 H 0.075 0.925 9 C -0.189 4.189 10 C -0.178 4.178 11 C 0.138 3.862 12 H 0.035 0.965 13 C -0.647 4.647 14 H 0.072 0.928 15 C -0.177 4.177 16 N -0.526 5.526 17 Si 0.896 3.104 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.214 1.214 21 O -0.291 6.291 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.178 -5.469 7.585 9.353 hybrid contribution 1.306 -0.738 1.361 2.025 sum 1.128 -6.208 8.946 10.947 Atomic orbital electron populations 1.21769 0.96356 1.00844 1.01901 1.21578 0.95465 0.97742 1.01313 1.21543 0.94715 0.95780 1.02666 1.21518 0.95994 0.96901 0.97425 0.91465 1.21854 1.00620 1.00263 0.97474 1.22507 0.92373 0.92402 0.90376 0.92523 1.23157 0.96761 0.99554 0.99412 1.23214 0.99965 0.97800 0.96807 1.20664 0.81821 0.95525 0.88239 0.96500 1.21990 1.20246 0.98216 1.24227 0.92815 1.25842 0.92637 1.03318 0.95896 1.70662 1.37734 1.02920 1.41282 0.83581 0.76287 0.74435 0.76082 1.20725 1.21414 1.21432 1.88746 1.33582 1.80530 1.26251 0.93384 0.93101 0.92490 0.92345 0.92551 0.92824 0.90473 0.92826 0.92968 0.93058 0.91955 0.91756 0.92116 0.91611 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.74 5.69 -26.73 -0.15 -1.89 16 3 C -0.11 -1.85 4.62 -26.73 -0.12 -1.97 16 4 C -0.10 -1.70 2.03 -90.62 -0.18 -1.88 16 5 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 6 C -0.14 -1.96 8.72 37.16 0.32 -1.64 16 7 C 0.08 1.65 3.09 -26.00 -0.08 1.57 16 8 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 9 C -0.15 -2.75 5.47 -24.72 -0.14 -2.88 16 10 C -0.14 -3.01 6.54 -24.42 -0.16 -3.17 16 11 C 0.19 5.08 2.80 -26.85 -0.08 5.00 16 12 H 0.02 0.49 8.00 -51.93 -0.42 0.07 16 13 C -0.61 -17.78 8.80 -34.44 -0.30 -18.09 16 14 H 0.05 1.54 7.76 -52.49 -0.41 1.13 16 15 C 0.03 0.92 5.42 -17.82 -0.10 0.83 16 16 N -0.89 -27.78 13.57 55.43 0.75 -27.03 16 17 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 O -0.37 -9.60 8.98 -35.23 -0.32 -9.92 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.58 7.60 -51.93 -0.39 1.18 16 29 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.05 0.67 7.05 -51.93 -0.37 0.30 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 36 H 0.28 8.80 6.61 -40.82 -0.27 8.53 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -30.97 284.02 -7.35 -38.32 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.37 Total: -0.53 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.62 Total: -25.71 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.75 Total: -27.03 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.32 Total: -9.92 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.97 -7.35 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308176737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.016 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds