Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 C 1.52995 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47440 * 55.00108 * 4 3 2 6 6 C 1.52999 * 109.47283 * 294.99891 * 4 3 2 7 7 C 1.53009 * 109.47040 * 174.99710 * 4 3 2 8 8 H 1.08994 * 109.89410 * 59.47644 * 7 4 3 9 9 C 1.54385 * 109.82784 * 180.41265 * 7 4 3 10 10 C 1.55417 * 102.30592 * 140.79884 * 9 7 4 11 11 C 1.54950 * 100.89324 * 325.98663 * 10 9 7 12 12 H 1.08990 * 110.31006 * 277.36126 * 11 10 9 13 13 C 1.50706 * 110.30527 * 155.28469 * 11 10 9 14 14 H 1.07999 * 120.00193 * 1.39967 * 13 11 10 15 15 C 1.37879 * 119.99398 * 181.39047 * 13 11 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 60.00420 * 17 15 13 21 21 O 1.43240 * 109.82581 * 298.54394 * 7 4 3 22 22 H 1.09000 * 109.47080 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47397 * 300.00082 * 1 2 3 24 24 H 1.09002 * 109.47086 * 60.00361 * 1 2 3 25 25 H 1.08998 * 109.47495 * 239.99370 * 2 1 3 26 26 H 1.09005 * 109.46690 * 119.99298 * 2 1 3 27 27 H 1.08998 * 109.47504 * 59.99376 * 3 2 1 28 28 H 1.09002 * 109.46898 * 299.99754 * 3 2 1 29 29 H 1.08997 * 109.47515 * 59.99591 * 6 4 3 30 30 H 1.09003 * 109.47196 * 180.02562 * 6 4 3 31 31 H 1.09009 * 109.46769 * 299.99777 * 6 4 3 32 32 H 1.09000 * 110.84591 * 259.05789 * 9 7 4 33 33 H 1.08997 * 110.84513 * 22.47980 * 9 7 4 34 34 H 1.09002 * 111.21107 * 208.06386 * 10 9 7 35 35 H 1.08995 * 111.08442 * 83.86682 * 10 9 7 36 36 H 0.97000 * 119.99706 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0795 0.8332 1.3083 7 6 4.0800 2.8797 -0.1252 8 1 3.7125 3.4780 0.7085 9 6 5.6238 2.8884 -0.1358 10 6 5.9416 3.9811 -1.1942 11 6 4.7660 3.7811 -2.1836 12 1 4.9868 2.9671 -2.8739 13 6 4.5010 5.0544 -2.9451 14 1 5.1162 5.9250 -2.7724 15 6 3.4730 5.1076 -3.8625 16 7 2.7236 4.0475 -4.0726 17 14 3.1449 6.6855 -4.8069 18 1 1.9943 6.4835 -5.7237 19 1 2.8301 7.7779 -3.8515 20 1 4.3491 7.0497 -5.5959 21 8 3.6354 3.4463 -1.3633 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.7161 -0.1905 1.3980 30 1 5.1695 0.8336 1.3089 31 1 3.7157 1.4229 2.1499 32 1 6.0168 3.1682 0.8416 33 1 6.0150 1.9197 -0.4466 34 1 6.8995 3.7935 -1.6794 35 1 5.9164 4.9762 -0.7502 36 1 2.8942 3.2280 -3.5825 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308176737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -105.550459 kcal Electronic energy + Delta-G solvation = -14869.385357 eV Core-core repulsion = 12544.202669 eV Total energy + Delta-G solvation = -2325.182688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46262 -37.30109 -34.89093 -33.34549 -32.55417 -29.33387 -27.47573 -26.20828 -23.87763 -22.50900 -21.73834 -20.85065 -19.10347 -17.34155 -16.62745 -16.10163 -15.67328 -15.49662 -15.30229 -14.66838 -14.28714 -13.81371 -13.40884 -13.36223 -13.14153 -12.85560 -12.65609 -12.47841 -12.34293 -12.23804 -11.94108 -11.92777 -11.80163 -11.52713 -11.30867 -11.08738 -10.77398 -10.62914 -9.88250 -8.65445 -6.43617 1.50794 1.60222 1.79290 2.56295 3.04924 3.48271 3.69564 3.80798 4.02081 4.11354 4.18515 4.27525 4.32525 4.47323 4.54880 4.61075 4.66624 4.80380 4.84167 4.87545 4.91861 5.01079 5.04393 5.08995 5.17227 5.22225 5.30205 5.36364 5.41095 5.52306 5.60727 5.96938 6.09536 6.53730 6.77971 7.50301 8.75228 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.009300 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.450326 B = 3010.099280 C = 3800.297200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.095 4.095 5 H 0.048 0.952 6 C -0.136 4.136 7 C 0.067 3.933 8 H 0.060 0.940 9 C -0.135 4.135 10 C -0.135 4.135 11 C 0.183 3.817 12 H -0.015 1.015 13 C -0.629 4.629 14 H 0.054 0.946 15 C -0.024 4.024 16 N -0.919 5.919 17 Si 1.118 2.882 18 H -0.283 1.283 19 H -0.272 1.272 20 H -0.264 1.264 21 O -0.405 6.405 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -6.424 10.598 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.113 4.113 5 H 0.067 0.933 6 C -0.193 4.193 7 C 0.009 3.991 8 H 0.078 0.922 9 C -0.173 4.173 10 C -0.173 4.173 11 C 0.127 3.873 12 H 0.003 0.997 13 C -0.666 4.666 14 H 0.073 0.927 15 C -0.225 4.225 16 N -0.555 5.555 17 Si 0.938 3.062 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.189 1.189 21 O -0.325 6.325 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.631 -5.740 9.421 11.050 hybrid contribution 1.068 -0.681 0.848 1.524 sum 1.700 -6.421 10.269 12.230 Atomic orbital electron populations 1.21767 0.95511 1.02124 1.01400 1.21546 0.96245 0.95631 1.02127 1.21488 0.94947 0.97447 1.00557 1.21459 0.95885 0.94855 0.99150 0.93300 1.21794 1.01366 1.01093 0.95045 1.22886 0.94211 0.94006 0.87991 0.92174 1.23117 0.94983 0.99056 1.00109 1.23117 0.98549 0.98971 0.96644 1.20563 0.84074 0.93398 0.89227 0.99700 1.22442 1.20087 0.99239 1.24861 0.92728 1.27449 0.92400 1.05685 0.96944 1.70796 1.39216 1.03208 1.42239 0.82966 0.76989 0.70878 0.75348 1.20845 1.19771 1.18896 1.88660 1.34042 1.81412 1.28415 0.91194 0.92161 0.94488 0.93242 0.89861 0.92016 0.95429 0.90916 0.91746 0.91954 0.88352 0.90363 0.90590 0.91926 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.20 5.69 30.60 0.17 -3.02 16 3 C -0.11 -3.63 4.62 30.59 0.14 -3.49 16 4 C -0.09 -3.16 2.03 -10.79 -0.02 -3.18 16 5 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 6 C -0.14 -3.21 8.72 71.98 0.63 -2.58 16 7 C 0.07 2.66 3.09 31.07 0.10 2.76 16 8 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 9 C -0.14 -4.61 5.47 31.90 0.17 -4.44 16 10 C -0.14 -5.70 6.54 32.09 0.21 -5.49 16 11 C 0.18 9.95 2.80 30.52 0.09 10.03 16 12 H -0.01 -0.86 8.00 -2.39 -0.02 -0.88 16 13 C -0.63 -37.58 8.80 25.60 0.23 -37.35 16 14 H 0.05 3.15 7.76 -2.91 -0.02 3.13 16 15 C -0.02 -1.43 5.42 84.66 0.46 -0.97 16 16 N -0.92 -59.63 13.57 21.45 0.29 -59.34 16 17 Si 1.12 52.07 29.90 68.60 2.05 54.12 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 21 O -0.40 -21.73 8.98 -148.98 -1.34 -23.07 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.83 6.56 -2.38 -0.02 1.81 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.03 1.18 7.60 -2.39 -0.02 1.17 16 29 H 0.07 1.47 6.56 -2.39 -0.02 1.45 16 30 H 0.06 1.39 7.05 -2.39 -0.02 1.37 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.08 2.46 7.56 -2.39 -0.02 2.44 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 36 H 0.26 17.55 6.61 -92.71 -0.61 16.94 16 Total: -1.00 -70.08 284.02 5.06 -65.02 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.17 Total: 14.03 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 2.88 Total: -50.77 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.29 Total: -59.34 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.34 Total: -23.07 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.05 Total: 54.12 kcal Total: -70.08 5.06 -65.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308176737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.528 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds