Wall clock time and date at job start Mon Mar 30 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47522 * 2 1 4 4 H 1.09000 * 109.47160 * 54.99703 * 3 2 1 5 5 C 1.53006 * 109.46626 * 295.00072 * 3 2 1 6 6 C 1.52997 * 109.47592 * 175.00036 * 3 2 1 7 7 C 1.52996 * 109.47276 * 184.99834 * 6 3 2 8 8 H 1.09003 * 110.27569 * 305.70347 * 7 6 3 9 9 C 1.54947 * 110.30980 * 183.61059 * 7 6 3 10 10 C 1.55305 * 100.93940 * 204.64248 * 9 7 6 11 11 C 1.54375 * 102.25853 * 34.13086 * 10 9 7 12 12 H 1.09001 * 109.83053 * 98.15649 * 11 10 9 13 13 C 1.50698 * 109.83364 * 219.13400 * 11 10 9 14 14 H 1.07998 * 120.00007 * 359.97438 * 13 11 10 15 15 C 1.37881 * 119.99860 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00311 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99659 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47381 * 59.99536 * 17 15 13 19 19 H 1.48504 * 109.47081 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46922 * 299.99477 * 17 15 13 21 21 O 1.43388 * 107.61014 * 338.56188 * 11 10 9 22 22 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47330 * 300.00242 * 1 2 3 24 24 H 1.09000 * 109.47130 * 60.00256 * 1 2 3 25 25 H 1.09002 * 109.47330 * 239.99758 * 2 1 3 26 26 H 1.09000 * 109.47130 * 119.99744 * 2 1 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 5 3 2 28 28 H 1.09001 * 109.46998 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47050 * 299.99699 * 5 3 2 30 30 H 1.09001 * 109.46992 * 305.00257 * 6 3 2 31 31 H 1.08998 * 109.47097 * 64.99445 * 6 3 2 32 32 H 1.09002 * 111.12157 * 322.55305 * 9 7 6 33 33 H 1.08997 * 111.12515 * 86.72387 * 9 7 6 34 34 H 1.09005 * 110.84697 * 152.32618 * 10 9 7 35 35 H 1.09011 * 110.84776 * 275.93991 * 10 9 7 36 36 H 0.96993 * 120.00309 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8849 0.2511 8 1 3.6940 3.4868 -0.5788 9 6 5.6132 2.9157 0.2884 10 6 5.8634 4.2527 1.0379 11 6 4.6743 4.3050 2.0209 12 1 4.9902 3.9519 3.0026 13 6 4.1588 5.7172 2.1252 14 1 4.6248 6.5058 1.5531 15 6 3.0928 6.0027 2.9518 16 7 2.5256 5.0425 3.6489 17 14 2.4534 7.7531 3.0805 18 1 2.0041 8.2157 1.7429 19 1 1.3112 7.7945 4.0286 20 1 3.5372 8.6410 3.5730 21 8 3.6456 3.4507 1.5032 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5489 2.1251 -1.3969 28 1 1.9982 3.1542 -1.3073 29 1 2.0698 1.5874 -2.1492 30 1 3.8570 0.8800 1.0113 31 1 4.0029 0.9835 -0.7596 32 1 6.0094 2.0701 0.8508 33 1 6.0299 2.9457 -0.7183 34 1 6.8109 4.2242 1.5762 35 1 5.8335 5.0959 0.3476 36 1 1.7755 5.2433 4.2301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414960.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:38 Heat of formation + Delta-G solvation = -97.223188 kcal Electronic energy + Delta-G solvation = -14816.304106 eV Core-core repulsion = 12491.482516 eV Total energy + Delta-G solvation = -2324.821591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.09501 -37.55723 -34.69373 -32.62075 -32.25406 -29.88061 -27.94216 -26.06644 -24.06404 -22.08920 -21.60696 -20.46968 -18.56877 -17.36237 -16.75530 -16.14625 -15.89055 -15.38024 -14.91720 -14.39790 -13.97800 -13.90039 -13.70810 -13.16441 -12.91764 -12.80323 -12.75110 -12.43409 -12.37398 -12.33551 -12.02465 -11.94596 -11.55505 -11.34052 -11.25195 -11.03393 -10.90420 -10.64461 -9.70751 -8.11317 -6.33198 1.37758 1.40827 1.48349 2.40394 3.08965 3.59529 3.81368 3.97440 4.09102 4.17931 4.29305 4.39042 4.47598 4.63906 4.67654 4.71692 4.77499 4.85964 4.97020 4.97806 5.04869 5.08519 5.13237 5.20408 5.23748 5.26351 5.41610 5.44200 5.58666 5.64871 5.69880 5.78274 6.21117 6.63670 7.11749 7.43977 8.95205 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.009368 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.774599 B = 2988.157902 C = 3620.165468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.091 4.091 4 H 0.034 0.966 5 C -0.141 4.141 6 C -0.100 4.100 7 C 0.062 3.938 8 H 0.047 0.953 9 C -0.140 4.140 10 C -0.140 4.140 11 C 0.197 3.803 12 H -0.003 1.003 13 C -0.565 4.565 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.957 3.043 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.264 1.264 21 O -0.390 6.390 22 H 0.067 0.933 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -8.159 -9.570 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.110 4.110 4 H 0.052 0.948 5 C -0.198 4.198 6 C -0.137 4.137 7 C 0.004 3.996 8 H 0.065 0.935 9 C -0.178 4.178 10 C -0.177 4.177 11 C 0.141 3.859 12 H 0.015 0.985 13 C -0.603 4.603 14 H 0.077 0.923 15 C -0.179 4.179 16 N -0.540 5.540 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.189 1.189 21 O -0.310 6.310 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.290 -8.245 -9.337 12.460 hybrid contribution -0.294 1.167 0.569 1.331 sum -0.004 -7.078 -8.768 11.268 Atomic orbital electron populations 1.21811 0.95684 1.01954 1.01461 1.21525 0.96200 0.95063 1.02130 1.21050 0.95376 0.96727 0.97850 0.94762 1.21846 1.01262 0.99796 0.96888 1.21702 0.95697 0.94396 1.01944 1.23071 0.93570 0.94508 0.88414 0.93510 1.23239 0.95799 0.97172 1.01574 1.23079 0.98531 0.97714 0.98400 1.20180 0.85135 0.89012 0.91588 0.98491 1.21804 1.17386 0.94350 1.26757 0.92276 1.25941 0.96497 1.01103 0.94397 1.70181 1.22746 1.33935 1.27106 0.85655 0.78078 0.80013 0.78100 1.19577 1.20829 1.18860 1.88700 1.43277 1.63792 1.35250 0.91369 0.94508 0.92026 0.90244 0.92804 0.92380 0.94508 0.90837 0.92934 0.88812 0.90593 0.88459 0.90836 0.91809 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.67 71.98 0.70 -2.94 16 2 C -0.11 -2.89 5.40 30.59 0.17 -2.72 16 3 C -0.09 -3.00 2.35 -10.79 -0.03 -3.03 16 4 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 5 C -0.14 -4.10 8.72 71.98 0.63 -3.47 16 6 C -0.10 -3.30 4.42 30.59 0.14 -3.16 16 7 C 0.06 2.52 3.26 31.26 0.10 2.62 16 8 H 0.05 1.93 6.38 -2.39 -0.02 1.92 16 9 C -0.14 -4.86 6.57 32.05 0.21 -4.65 16 10 C -0.14 -5.84 6.53 31.85 0.21 -5.63 16 11 C 0.20 10.74 3.36 30.31 0.10 10.84 16 12 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 13 C -0.57 -33.23 8.74 25.60 0.22 -33.00 16 14 H 0.06 3.33 7.52 -2.91 -0.02 3.31 16 15 C 0.02 1.32 5.41 84.66 0.46 1.78 16 16 N -0.90 -56.70 12.93 21.45 0.28 -56.43 16 17 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 21 O -0.39 -21.20 9.85 -148.98 -1.47 -22.67 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.37 6.56 -2.39 -0.02 1.36 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.57 6.56 -2.39 -0.02 1.55 16 28 H 0.04 1.22 6.46 -2.39 -0.02 1.21 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.08 2.45 8.06 -2.39 -0.02 2.43 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 35 H 0.06 2.64 7.66 -2.38 -0.02 2.62 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -68.13 284.82 4.76 -63.38 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.02 Total: 11.56 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 2.90 Total: -43.37 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.28 Total: -56.43 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.47 Total: -22.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.13 4.76 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414960.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.848 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds