Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53005 * 109.46867 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 7 7 C 1.53001 * 109.46871 * 184.99808 * 6 3 2 8 8 H 1.09000 * 109.87066 * 53.99029 * 7 6 3 9 9 C 1.54103 * 109.87812 * 175.00231 * 7 6 3 10 10 C 1.54807 * 104.18838 * 121.45474 * 9 7 6 11 11 C 1.54991 * 102.09385 * 20.87783 * 10 9 7 12 12 H 1.08998 * 110.62045 * 81.63870 * 11 10 9 13 13 C 1.50706 * 110.61927 * 204.47298 * 11 10 9 14 14 H 1.08001 * 120.00012 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00024 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99814 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99980 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47292 * 89.99815 * 17 15 13 19 19 H 1.48495 * 109.47098 * 209.99851 * 17 15 13 20 20 H 1.48507 * 109.47048 * 330.00166 * 17 15 13 21 21 O 1.43751 * 109.87854 * 292.82872 * 7 6 3 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 5 3 2 28 28 H 1.09004 * 109.46908 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47443 * 300.00098 * 5 3 2 30 30 H 1.08993 * 109.47416 * 304.99509 * 6 3 2 31 31 H 1.09001 * 109.46966 * 65.00241 * 6 3 2 32 32 H 1.09006 * 110.48463 * 240.12874 * 9 7 6 33 33 H 1.09002 * 110.48917 * 2.77522 * 9 7 6 34 34 H 1.09003 * 110.91118 * 139.08201 * 10 9 7 35 35 H 1.09003 * 110.90598 * 262.64496 * 10 9 7 36 36 H 0.97007 * 119.99660 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8849 0.2511 8 1 3.5500 3.3855 1.0714 9 6 5.5847 2.8922 0.5036 10 6 6.1612 3.7140 -0.6748 11 6 4.9242 4.5219 -1.1432 12 1 4.7800 5.4013 -0.5156 13 6 5.0678 4.9218 -2.5891 14 1 5.9502 4.6372 -3.1430 15 6 4.0728 5.6510 -3.2048 16 7 2.9980 5.9971 -2.5305 17 14 4.2505 6.1460 -4.9972 18 1 3.6686 5.0889 -5.8628 19 1 3.5351 7.4262 -5.2304 20 1 5.6893 6.3164 -5.3233 21 8 3.8324 3.5916 -0.9790 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5489 2.1252 -1.3970 28 1 1.9989 3.1541 -1.3076 29 1 2.0698 1.5874 -2.1492 30 1 3.8570 0.8801 1.0113 31 1 4.0029 0.9835 -0.7597 32 1 5.8113 3.3766 1.4535 33 1 5.9787 1.8760 0.4890 34 1 6.9542 4.3795 -0.3338 35 1 6.5208 3.0578 -1.4675 36 1 2.2981 6.5104 -2.9636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = -93.969888 kcal Electronic energy + Delta-G solvation = -14933.996831 eV Core-core repulsion = 12609.316315 eV Total energy + Delta-G solvation = -2324.680517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13203 -37.43215 -34.71787 -32.63959 -32.20570 -29.81364 -27.98041 -25.92391 -23.96703 -22.25104 -21.29191 -20.76112 -18.62266 -17.14402 -16.50816 -16.46249 -15.58158 -15.34174 -15.09815 -14.33493 -14.12621 -13.88182 -13.62935 -13.09793 -12.93246 -12.81618 -12.71361 -12.53613 -12.37947 -12.11910 -11.95428 -11.82814 -11.40555 -11.33065 -11.24196 -10.95399 -10.82015 -10.59457 -9.86288 -8.14418 -6.33288 1.39855 1.41390 1.51541 2.40990 3.07236 3.69683 3.81189 4.01061 4.13826 4.22561 4.24102 4.41758 4.53336 4.61585 4.73710 4.75875 4.77152 4.94572 4.96323 5.01045 5.10216 5.12257 5.17506 5.20987 5.27790 5.37617 5.43579 5.48961 5.56589 5.65061 5.76574 5.94163 6.24994 6.65271 7.02383 7.41144 8.93817 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029485 B = 0.009592 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.412061 B = 2918.361637 C = 3614.381300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.060 0.940 5 C -0.144 4.144 6 C -0.100 4.100 7 C 0.054 3.946 8 H 0.038 0.962 9 C -0.141 4.141 10 C -0.140 4.140 11 C 0.193 3.807 12 H -0.011 1.011 13 C -0.548 4.548 14 H 0.062 0.938 15 C 0.025 3.975 16 N -0.900 5.900 17 Si 0.958 3.042 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.262 1.262 21 O -0.368 6.368 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -10.121 5.951 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.078 0.922 5 C -0.201 4.201 6 C -0.138 4.138 7 C -0.004 4.004 8 H 0.056 0.944 9 C -0.178 4.178 10 C -0.178 4.178 11 C 0.138 3.862 12 H 0.007 0.993 13 C -0.586 4.586 14 H 0.080 0.920 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.186 1.186 21 O -0.288 6.288 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.863 -10.061 5.809 11.650 hybrid contribution 0.032 0.770 -0.851 1.148 sum -0.831 -9.290 4.959 10.563 Atomic orbital electron populations 1.21803 0.95564 1.01919 1.01584 1.21544 0.96278 0.95104 1.02111 1.21068 0.95136 0.96538 0.97312 0.92168 1.21918 0.99166 1.02047 0.96925 1.21786 0.95537 0.94326 1.02130 1.22821 0.94974 0.93784 0.88822 0.94383 1.22937 0.95144 1.01311 0.98441 1.23052 0.98584 0.98654 0.97461 1.20557 0.83099 0.87712 0.94854 0.99285 1.21392 1.05009 1.34688 0.97465 0.92029 1.25899 0.94654 0.94860 1.02332 1.70160 1.08331 1.37319 1.37984 0.85581 0.78710 0.77581 0.79892 1.20292 1.20549 1.18623 1.89218 1.47733 1.53447 1.38449 0.93601 0.91502 0.92672 0.92517 0.90646 0.93663 0.92288 0.94954 0.89038 0.92690 0.90500 0.89363 0.91263 0.92240 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.67 71.98 0.70 -2.74 16 2 C -0.11 -2.81 5.40 30.59 0.17 -2.64 16 3 C -0.08 -2.63 2.39 -10.79 -0.03 -2.65 16 4 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.14 -5.71 8.34 71.98 0.60 -5.11 16 6 C -0.10 -3.25 4.29 30.60 0.13 -3.12 16 7 C 0.05 2.16 3.36 30.97 0.10 2.26 16 8 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 9 C -0.14 -4.85 6.64 31.58 0.21 -4.64 16 10 C -0.14 -5.85 6.55 31.89 0.21 -5.64 16 11 C 0.19 10.34 3.09 30.53 0.09 10.43 16 12 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 13 C -0.55 -31.69 8.82 25.60 0.23 -31.46 16 14 H 0.06 3.44 7.77 -2.91 -0.02 3.42 16 15 C 0.02 1.42 5.44 84.65 0.46 1.88 16 16 N -0.90 -54.92 13.13 21.45 0.28 -54.64 16 17 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 O -0.37 -19.06 7.38 -148.98 -1.10 -20.16 16 22 H 0.04 1.14 6.56 -2.39 -0.02 1.13 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.63 6.57 -2.39 -0.02 1.62 16 28 H 0.06 2.95 5.33 -2.38 -0.01 2.93 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.09 2.55 7.70 -2.39 -0.02 2.53 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 36 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -64.60 283.35 5.09 -59.51 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.01 Total: 11.87 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 2.87 Total: -43.44 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.28 Total: -54.64 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -1.10 Total: -20.16 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.60 5.09 -59.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.459 kcal (2) G-P(sol) polarization free energy of solvation -64.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds