Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 H 1.09004 * 109.46881 * 54.99826 * 3 2 1 5 5 C 1.53004 * 109.47024 * 295.00500 * 3 2 1 6 6 C 1.52997 * 109.47504 * 175.00186 * 3 2 1 7 7 C 1.53000 * 109.47060 * 185.00270 * 6 3 2 8 8 H 1.08998 * 110.27705 * 55.63568 * 7 6 3 9 9 C 1.54947 * 110.30642 * 177.83545 * 7 6 3 10 10 C 1.55307 * 100.94418 * 155.35784 * 9 7 6 11 11 C 1.54387 * 102.25224 * 325.86575 * 10 9 7 12 12 H 1.08994 * 109.83083 * 261.84500 * 11 10 9 13 13 C 1.50695 * 109.90723 * 140.91096 * 11 10 9 14 14 H 1.07999 * 120.00030 * 0.36217 * 13 11 10 15 15 C 1.37882 * 120.00004 * 180.36845 * 13 11 10 16 16 N 1.31511 * 119.99751 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00074 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47285 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47163 * 120.00086 * 17 15 13 20 20 H 1.48500 * 109.47272 * 240.00023 * 17 15 13 21 21 O 1.43248 * 107.58654 * 21.35547 * 11 10 9 22 22 H 1.09003 * 109.46886 * 299.99675 * 1 2 3 23 23 H 1.08999 * 109.47667 * 59.99882 * 1 2 3 24 24 H 1.09001 * 109.47573 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46886 * 240.00325 * 2 1 3 26 26 H 1.08998 * 109.47228 * 120.00420 * 2 1 3 27 27 H 1.09004 * 109.46741 * 299.99412 * 5 3 2 28 28 H 1.09000 * 109.47403 * 59.99547 * 5 3 2 29 29 H 1.09001 * 109.46917 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47153 * 64.99951 * 6 3 2 31 31 H 1.09001 * 109.46832 * 305.00142 * 6 3 2 32 32 H 1.09003 * 111.12693 * 273.27606 * 9 7 6 33 33 H 1.09000 * 111.12803 * 37.43732 * 9 7 6 34 34 H 1.08992 * 110.85019 * 207.67402 * 10 9 7 35 35 H 1.09003 * 110.84439 * 84.04935 * 10 9 7 36 36 H 0.97000 * 119.99985 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.5752 3.3829 1.0883 9 6 5.6029 2.9065 0.4342 10 6 5.9437 4.3240 -0.1010 11 6 4.9029 4.5083 -1.2263 12 1 5.3557 4.2771 -2.1904 13 6 4.3943 5.9269 -1.2276 14 1 4.7727 6.6368 -0.5071 15 6 3.4458 6.3184 -2.1486 16 7 2.9853 5.4539 -3.0261 17 14 2.8149 8.0765 -2.1497 18 1 3.4873 8.8445 -1.0711 19 1 3.1081 8.7068 -3.4620 20 1 1.3482 8.0763 -1.9174 21 8 3.8217 3.6048 -0.9680 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0698 1.5875 -2.1492 28 1 0.5489 2.1252 -1.3969 29 1 1.9990 3.1540 -1.3075 30 1 4.0029 0.9835 -0.7597 31 1 3.8570 0.8799 1.0113 32 1 5.8749 2.8076 1.4852 33 1 6.0811 2.1338 -0.1677 34 1 6.9571 4.3543 -0.5012 35 1 5.8102 5.0751 0.6776 36 1 2.3178 5.7292 -3.6738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -92.444922 kcal Electronic energy + Delta-G solvation = -14967.716710 eV Core-core repulsion = 12643.102321 eV Total energy + Delta-G solvation = -2324.614389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09929 -37.44224 -34.65315 -32.59182 -32.23012 -29.77525 -27.95869 -25.90671 -23.99333 -22.00122 -21.52061 -20.66186 -18.54819 -17.20104 -16.79811 -16.32292 -15.57534 -15.30057 -14.78404 -14.35269 -14.19532 -13.73890 -13.54687 -13.22286 -12.89448 -12.80084 -12.66805 -12.49912 -12.38540 -12.15590 -11.96911 -11.77455 -11.42423 -11.36851 -11.24585 -11.02494 -10.76496 -10.54326 -9.67144 -8.07231 -6.27704 1.38669 1.40072 1.51514 2.42588 3.11983 3.61613 3.81882 4.00076 4.14243 4.21247 4.29758 4.45433 4.52810 4.66814 4.74903 4.75819 4.78259 4.97597 4.98107 5.04824 5.06915 5.12737 5.18902 5.22141 5.29117 5.39494 5.44461 5.50470 5.63288 5.69875 5.78504 6.07408 6.27880 6.68598 7.16626 7.48340 8.98488 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.009837 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.672021 B = 2845.636467 C = 3575.840531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.058 0.942 5 C -0.142 4.142 6 C -0.101 4.101 7 C 0.063 3.937 8 H 0.041 0.959 9 C -0.139 4.139 10 C -0.140 4.140 11 C 0.193 3.807 12 H -0.003 1.003 13 C -0.562 4.562 14 H 0.055 0.945 15 C 0.027 3.973 16 N -0.894 5.894 17 Si 0.952 3.048 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.282 1.282 21 O -0.369 6.369 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -9.184 7.471 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.101 4.101 4 H 0.077 0.923 5 C -0.199 4.199 6 C -0.139 4.139 7 C 0.004 3.996 8 H 0.059 0.941 9 C -0.176 4.176 10 C -0.178 4.178 11 C 0.137 3.863 12 H 0.015 0.985 13 C -0.600 4.600 14 H 0.073 0.927 15 C -0.175 4.175 16 N -0.531 5.531 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.208 1.208 21 O -0.290 6.290 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.828 -9.238 7.188 11.735 hybrid contribution -0.228 1.241 -0.396 1.323 sum -1.056 -7.997 6.792 10.545 Atomic orbital electron populations 1.21804 0.95665 1.01890 1.01528 1.21542 0.96208 0.95155 1.02098 1.21066 0.95195 0.96470 0.97342 0.92308 1.21909 0.98911 1.02379 0.96710 1.21753 0.95516 0.94438 1.02162 1.23006 0.94567 0.93010 0.88968 0.94101 1.23214 0.95683 0.96511 1.02225 1.23074 0.99192 0.97000 0.98486 1.20178 0.85000 0.88669 0.92455 0.98547 1.21810 1.25022 0.96322 1.16848 0.92679 1.25830 0.96180 1.00870 0.94648 1.70179 1.29035 1.35552 1.18380 0.85628 0.78029 0.80506 0.78123 1.18989 1.20316 1.20796 1.88742 1.45180 1.55322 1.39706 0.92731 0.93678 0.91488 0.92497 0.90636 0.95055 0.94060 0.91822 0.92682 0.88970 0.88722 0.90612 0.91109 0.92018 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.67 71.98 0.70 -2.81 16 2 C -0.11 -2.83 5.40 30.59 0.17 -2.66 16 3 C -0.08 -2.66 2.39 -10.79 -0.03 -2.68 16 4 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 5 C -0.14 -5.74 8.36 71.98 0.60 -5.14 16 6 C -0.10 -3.25 4.55 30.59 0.14 -3.11 16 7 C 0.06 2.46 3.39 31.26 0.11 2.57 16 8 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 9 C -0.14 -4.72 6.57 32.05 0.21 -4.51 16 10 C -0.14 -5.77 6.53 31.86 0.21 -5.56 16 11 C 0.19 10.25 3.36 30.32 0.10 10.35 16 12 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 13 C -0.56 -32.43 8.75 25.60 0.22 -32.20 16 14 H 0.06 3.10 7.53 -2.91 -0.02 3.08 16 15 C 0.03 1.56 5.41 84.66 0.46 2.01 16 16 N -0.89 -54.43 12.91 21.45 0.28 -54.16 16 17 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 O -0.37 -19.00 6.89 -148.98 -1.03 -20.03 16 22 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.15 6.57 -2.39 -0.02 1.14 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.53 6.57 -2.39 -0.02 1.51 16 29 H 0.06 3.22 5.30 -2.39 -0.01 3.21 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.08 2.41 8.06 -2.39 -0.02 2.39 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.60 282.72 5.18 -59.42 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.01 Total: 11.43 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 2.88 Total: -43.75 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.28 Total: -54.16 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.03 Total: -20.03 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.60 5.18 -59.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.023 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds