Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00059 * 2 1 4 4 C 1.50698 * 109.46853 * 68.91487 * 3 2 1 5 5 H 1.08001 * 120.00335 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99731 * 180.02562 * 4 3 2 7 7 N 1.31525 * 119.99480 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00414 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47268 * 89.99795 * 8 6 4 10 10 H 1.48503 * 109.47339 * 210.00275 * 8 6 4 11 11 H 1.48508 * 109.46967 * 330.00087 * 8 6 4 12 12 C 1.46906 * 110.99787 * 236.05023 * 2 1 3 13 13 H 1.08998 * 112.84734 * 55.40251 * 12 2 1 14 14 C 1.53777 * 113.61321 * 186.70885 * 12 2 1 15 15 C 1.53773 * 87.08259 * 89.11598 * 14 12 2 16 16 H 1.09006 * 113.69344 * 270.87601 * 15 14 12 17 17 N 1.46897 * 113.61598 * 139.98134 * 15 14 12 18 18 C 1.53780 * 113.61333 * 284.20658 * 12 2 1 19 19 C 1.52998 * 113.61414 * 25.43151 * 18 12 2 20 20 C 1.53001 * 113.61348 * 156.33768 * 18 12 2 21 21 H 1.08999 * 109.47847 * 68.42397 * 1 2 3 22 22 H 1.09008 * 109.47387 * 188.42852 * 1 2 3 23 23 H 1.09004 * 109.47358 * 308.42150 * 1 2 3 24 24 H 1.09003 * 109.46763 * 308.91745 * 3 2 1 25 25 H 1.08995 * 109.47337 * 188.91995 * 3 2 1 26 26 H 0.97000 * 119.99215 * 179.97438 * 7 6 4 27 27 H 1.09004 * 113.61488 * 203.66676 * 14 12 2 28 28 H 1.08999 * 113.61491 * 334.56749 * 14 12 2 29 29 H 1.00893 * 111.00246 * 82.50664 * 17 15 14 30 30 H 1.00902 * 111.00325 * 206.45809 * 17 15 14 31 31 H 1.08995 * 109.47198 * 68.55085 * 19 18 12 32 32 H 1.08999 * 109.47279 * 188.54601 * 19 18 12 33 33 H 1.08992 * 109.47364 * 308.54805 * 19 18 12 34 34 H 1.08998 * 109.47157 * 59.99927 * 20 18 12 35 35 H 1.08997 * 109.46938 * 180.02562 * 20 18 12 36 36 H 1.09004 * 109.46962 * 299.99425 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6982 2.0235 1.3257 5 1 1.1713 1.4740 2.0918 6 6 2.0989 3.3217 1.5606 7 7 1.8400 3.8906 2.7178 8 14 3.0095 4.2725 0.2354 9 1 2.0308 4.9920 -0.6187 10 1 3.9266 5.2525 0.8709 11 1 3.7953 3.3286 -0.5996 12 6 1.9953 -0.7659 -1.1377 13 1 1.6145 -0.4148 -2.0968 14 6 3.5225 -0.9436 -1.1068 15 6 3.2783 -2.2232 -0.2898 16 1 3.2384 -2.0548 0.7864 17 7 4.1628 -3.3359 -0.6606 18 6 1.8932 -2.2894 -0.9547 19 6 0.7758 -2.7187 -0.0018 20 6 1.8827 -3.0657 -2.2731 21 1 -0.3635 0.3779 -0.9556 22 1 -0.3634 -1.0166 0.1506 23 1 -0.3634 0.6386 0.8052 24 1 1.5229 1.9420 -0.7996 25 1 3.0733 1.3468 -0.1593 26 1 2.1222 4.8038 2.8831 27 1 3.9605 -1.1287 -2.0877 28 1 4.0417 -0.1630 -0.5508 29 1 5.0584 -3.2538 -0.2034 30 1 3.7318 -4.2247 -0.4544 31 1 -0.1915 -2.5080 -0.4578 32 1 0.8585 -3.7871 0.1972 33 1 0.8643 -2.1669 0.9339 34 1 2.8037 -2.8648 -2.8203 35 1 1.8084 -4.1331 -2.0656 36 1 1.0280 -2.7521 -2.8726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405227976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 9.529503 kcal Electronic energy + Delta-G solvation = -15092.634192 eV Core-core repulsion = 12804.734497 eV Total energy + Delta-G solvation = -2287.899695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28715 -36.93270 -34.54344 -32.89992 -31.50104 -29.92544 -28.04889 -26.30275 -24.31530 -23.44744 -21.78523 -19.21545 -18.38834 -17.04794 -16.74855 -16.44019 -15.93241 -15.71249 -15.27696 -14.81013 -14.46110 -14.02522 -13.57390 -13.45377 -13.17776 -13.08319 -12.78549 -12.60005 -12.41589 -12.32845 -11.87837 -11.80178 -11.57529 -11.47699 -10.90427 -10.82437 -10.70264 -9.56787 -8.96296 -8.30226 -6.32486 1.31260 1.32924 1.44063 2.32029 3.02081 3.14097 3.61388 3.65677 3.75992 3.95291 4.25042 4.42670 4.45381 4.64042 4.67132 4.74332 4.86158 4.89763 4.90234 5.00311 5.02101 5.10431 5.12043 5.23253 5.26886 5.33697 5.52641 5.63774 5.69567 6.01158 6.35183 6.40541 6.69091 6.70679 6.73809 7.30860 8.86452 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040791 B = 0.008886 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.255905 B = 3150.257590 C = 3386.634985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.521 5.521 3 C 0.172 3.828 4 C -0.512 4.512 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.944 3.056 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.252 1.252 12 C 0.051 3.949 13 H 0.039 0.961 14 C -0.126 4.126 15 C 0.088 3.912 16 H 0.045 0.955 17 N -0.831 5.831 18 C -0.059 4.059 19 C -0.135 4.135 20 C -0.107 4.107 21 H 0.014 0.986 22 H 0.098 0.902 23 H 0.045 0.955 24 H -0.022 1.022 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.343 0.657 30 H 0.347 0.653 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -14.289 -10.186 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.245 5.245 3 C 0.045 3.955 4 C -0.550 4.550 5 H 0.056 0.944 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.767 3.233 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.058 4.058 13 H 0.057 0.943 14 C -0.164 4.164 15 C -0.024 4.024 16 H 0.063 0.937 17 N -0.362 5.362 18 C -0.060 4.060 19 C -0.192 4.192 20 C -0.165 4.165 21 H 0.033 0.967 22 H 0.116 0.884 23 H 0.064 0.936 24 H -0.004 1.004 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.840 -14.084 -10.396 17.602 hybrid contribution -0.039 1.330 0.419 1.395 sum 1.801 -12.754 -9.977 16.293 Atomic orbital electron populations 1.22658 0.87577 1.03107 0.99152 1.61731 1.07931 1.14028 1.40822 1.19918 0.95312 0.85942 0.94326 1.21249 1.36318 0.97716 0.99729 0.94350 1.25811 0.96765 0.98550 0.97760 1.70050 1.49056 1.14627 1.25108 0.85763 0.79247 0.78806 0.79437 1.19404 1.20452 1.17548 1.22838 0.96350 0.95149 0.91447 0.94284 1.23085 0.94860 0.97404 1.01071 1.22524 0.92971 0.91249 0.95649 0.93741 1.58861 1.06583 1.04678 1.66029 1.21899 0.94327 0.92696 0.97072 1.21880 0.97543 1.00764 0.99011 1.21357 1.01689 0.99569 0.93877 0.96742 0.88375 0.93626 1.00405 0.95161 0.92442 0.88324 0.93433 0.84417 0.83910 0.91894 0.91674 0.93091 0.91895 0.91034 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.88 8.83 127.69 1.13 2.01 16 2 N -0.52 -21.85 3.92 -898.52 -3.52 -25.37 16 3 C 0.17 8.52 3.70 85.56 0.32 8.84 16 4 C -0.51 -30.24 8.98 25.60 0.23 -30.01 16 5 H 0.04 2.52 7.61 -2.91 -0.02 2.50 16 6 C 0.01 0.49 5.47 84.65 0.46 0.96 16 7 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 8 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 12 C 0.05 1.75 2.84 45.44 0.13 1.88 16 13 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 14 C -0.13 -4.05 6.97 31.12 0.22 -3.83 16 15 C 0.09 2.47 4.30 45.44 0.20 2.66 16 16 H 0.04 1.50 8.08 -2.38 -0.02 1.48 16 17 N -0.83 -17.59 8.58 -166.50 -1.43 -19.02 16 18 C -0.06 -1.57 1.33 -51.66 -0.07 -1.64 16 19 C -0.14 -3.46 7.28 71.98 0.52 -2.94 16 20 C -0.11 -2.28 8.39 71.98 0.60 -1.68 16 21 H 0.01 0.52 8.13 -2.39 -0.02 0.50 16 22 H 0.10 3.16 4.02 -2.38 -0.01 3.16 16 23 H 0.04 2.03 6.89 -2.38 -0.02 2.02 16 24 H -0.02 -1.08 7.52 -2.39 -0.02 -1.10 16 25 H 0.03 1.51 5.19 -2.39 -0.01 1.49 16 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.10 2.83 7.65 -2.38 -0.02 2.81 16 28 H 0.05 1.77 6.43 -2.39 -0.02 1.76 16 29 H 0.34 6.63 9.08 -89.70 -0.81 5.82 16 30 H 0.35 6.08 9.05 -89.69 -0.81 5.27 16 31 H 0.06 1.52 6.66 -2.39 -0.02 1.50 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.59 6.69 -2.39 -0.02 1.58 16 34 H 0.06 1.39 7.14 -2.39 -0.02 1.37 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.78 273.74 0.36 -65.42 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.61 Total: 15.48 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 3.74 Total: -23.76 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.65 Total: -104.16 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -65.78 0.36 -65.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405227976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.948 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds