Wall clock time and date at job start Mon Mar 30 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 111.00248 * 2 1 4 4 C 1.50701 * 109.46720 * 293.95130 * 3 2 1 5 5 H 1.08006 * 120.00269 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99982 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00307 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99971 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47159 * 89.99457 * 8 6 4 10 10 H 1.48498 * 109.47019 * 329.99786 * 8 6 4 11 11 H 1.48499 * 109.47249 * 209.99542 * 8 6 4 12 12 C 1.46909 * 111.00134 * 123.94992 * 2 1 3 13 13 H 1.09004 * 112.84823 * 314.86796 * 12 2 1 14 14 C 1.53780 * 113.61621 * 183.66587 * 12 2 1 15 15 C 1.53775 * 87.08123 * 270.88663 * 14 12 2 16 16 H 1.09001 * 113.61719 * 89.11346 * 15 14 12 17 17 N 1.46903 * 113.61402 * 219.93674 * 15 14 12 18 18 C 1.53778 * 87.08270 * 334.56638 * 15 14 12 19 19 C 1.53000 * 113.61632 * 270.88535 * 18 15 14 20 20 C 1.53001 * 113.61351 * 139.98100 * 18 15 14 21 21 H 1.09001 * 109.46970 * 63.84527 * 1 2 3 22 22 H 1.08996 * 109.47542 * 183.84690 * 1 2 3 23 23 H 1.08999 * 109.47282 * 303.84646 * 1 2 3 24 24 H 1.08995 * 109.47089 * 173.95558 * 3 2 1 25 25 H 1.08996 * 109.47276 * 53.95103 * 3 2 1 26 26 H 0.96996 * 120.00684 * 180.02562 * 7 6 4 27 27 H 1.08998 * 113.61144 * 25.43744 * 14 12 2 28 28 H 1.08994 * 113.60997 * 156.33465 * 14 12 2 29 29 H 1.00900 * 110.99589 * 280.49230 * 17 15 14 30 30 H 1.00895 * 111.00235 * 44.44780 * 17 15 14 31 31 H 1.08998 * 109.47105 * 157.49637 * 19 18 15 32 32 H 1.08997 * 109.47110 * 277.49534 * 19 18 15 33 33 H 1.08995 * 109.47157 * 37.49586 * 19 18 15 34 34 H 1.08998 * 109.47422 * 315.72546 * 20 18 15 35 35 H 1.09002 * 109.47468 * 75.72939 * 20 18 15 36 36 H 1.09005 * 109.47112 * 195.72525 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0739 1.5114 -2.0486 6 6 2.0268 3.3493 -1.5286 7 7 1.7144 3.9388 -2.6620 8 14 3.0000 4.2761 -0.2311 9 1 4.4524 4.0635 -0.4560 10 1 2.6294 3.7756 1.1170 11 1 2.6919 5.7259 -0.3229 12 6 1.9954 -0.7659 1.1377 13 1 1.4855 -0.5379 2.0737 14 6 3.5289 -0.7310 1.2471 15 6 3.5436 -1.9705 0.3371 16 1 3.5762 -1.7316 -0.7258 17 7 4.5423 -2.9749 0.7270 18 6 2.1283 -2.2722 0.8576 19 6 2.1108 -3.1345 2.1213 20 6 1.1732 -2.7810 -0.2240 21 1 -0.3633 0.4530 -0.9225 22 1 -0.3634 -1.0253 0.0689 23 1 -0.3634 0.5724 0.8535 24 1 3.0797 1.3443 0.1082 25 1 1.5611 1.9274 0.8308 26 1 1.9890 4.8549 -2.8241 27 1 3.9791 0.1508 0.7911 28 1 3.8993 -0.9239 2.2538 29 1 5.4624 -2.7132 0.4062 30 1 4.5357 -3.1229 1.7250 31 1 1.1701 -2.9839 2.6509 32 1 2.2087 -4.1846 1.8460 33 1 2.9411 -2.8493 2.7673 34 1 1.2879 -2.1766 -1.1237 35 1 1.4046 -3.8212 -0.4531 36 1 0.1463 -2.7078 0.1344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405227977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:55 Heat of formation + Delta-G solvation = 6.134145 kcal Electronic energy + Delta-G solvation = -15114.827365 eV Core-core repulsion = 12826.780435 eV Total energy + Delta-G solvation = -2288.046929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35862 -36.99883 -34.54674 -32.91735 -31.19411 -29.91257 -28.13208 -26.31093 -24.36819 -23.56949 -21.72857 -19.29806 -18.52787 -17.08587 -16.68934 -16.58171 -15.96629 -15.55018 -15.12572 -14.57574 -14.32886 -14.01373 -13.65509 -13.48680 -13.17050 -13.08469 -12.77773 -12.61563 -12.57559 -12.34879 -12.19621 -11.91001 -11.53931 -11.50156 -10.95458 -10.89496 -10.75671 -9.41223 -8.95309 -8.29998 -6.32518 1.30557 1.32156 1.42759 2.31444 3.02202 3.12658 3.59175 3.66158 3.76661 3.99143 4.17948 4.39208 4.42665 4.63153 4.65539 4.69664 4.80092 4.86746 4.90525 4.98916 5.02991 5.13323 5.15547 5.21389 5.23518 5.31310 5.51604 5.61271 5.70901 6.01118 6.30979 6.39506 6.69474 6.73451 6.74204 7.30759 8.86676 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039471 B = 0.009177 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.212274 B = 3050.474895 C = 3341.528259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.521 5.521 3 C 0.171 3.829 4 C -0.513 4.513 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.264 1.264 10 H -0.255 1.255 11 H -0.281 1.281 12 C 0.054 3.946 13 H 0.043 0.957 14 C -0.180 4.180 15 C 0.100 3.900 16 H 0.080 0.920 17 N -0.835 5.835 18 C -0.062 4.062 19 C -0.115 4.115 20 C -0.124 4.124 21 H 0.046 0.954 22 H 0.085 0.915 23 H 0.011 0.989 24 H 0.034 0.966 25 H -0.021 1.021 26 H 0.267 0.733 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.345 0.655 30 H 0.347 0.653 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -12.780 11.861 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.245 5.245 3 C 0.045 3.955 4 C -0.552 4.552 5 H 0.057 0.943 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.768 3.232 9 H -0.189 1.189 10 H -0.179 1.179 11 H -0.206 1.206 12 C -0.055 4.055 13 H 0.061 0.939 14 C -0.220 4.220 15 C -0.013 4.013 16 H 0.098 0.902 17 N -0.365 5.365 18 C -0.063 4.063 19 C -0.173 4.173 20 C -0.181 4.181 21 H 0.065 0.935 22 H 0.104 0.896 23 H 0.030 0.970 24 H 0.052 0.948 25 H -0.004 1.004 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.190 -13.374 10.878 17.533 hybrid contribution 0.300 2.311 1.113 2.583 sum 3.491 -11.063 11.991 16.685 Atomic orbital electron populations 1.22314 0.87548 1.01310 0.99642 1.61696 1.07843 1.14075 1.40873 1.19978 0.95504 0.85820 0.94247 1.21273 1.34689 0.97458 1.01766 0.94343 1.25816 0.97086 0.98431 0.97578 1.70044 1.48699 1.13908 1.26206 0.85759 0.79555 0.77786 0.80128 1.18883 1.17878 1.20640 1.22811 0.95609 0.95556 0.91536 0.93909 1.24018 0.95762 1.00831 1.01387 1.22597 0.92324 0.88570 0.97783 0.90199 1.58685 1.09509 1.47962 1.20358 1.21976 0.94958 0.92485 0.96891 1.21453 1.01846 0.99383 0.94601 1.21616 0.98180 1.00143 0.98142 0.93504 0.89642 0.97030 0.94822 1.00374 0.92449 0.92661 0.88098 0.84176 0.83779 0.92288 0.90997 0.91839 0.93532 0.92350 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 8.83 127.69 1.13 2.68 16 2 N -0.52 -21.57 3.72 -898.51 -3.34 -24.91 16 3 C 0.17 8.35 3.62 85.56 0.31 8.66 16 4 C -0.51 -30.14 9.12 25.60 0.23 -29.90 16 5 H 0.04 2.51 7.34 -2.91 -0.02 2.49 16 6 C 0.01 0.48 5.47 84.65 0.46 0.94 16 7 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 8 Si 0.94 44.65 27.47 68.60 1.88 46.54 16 9 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.05 1.78 2.90 45.44 0.13 1.91 16 13 H 0.04 1.38 8.07 -2.39 -0.02 1.36 16 14 C -0.18 -5.33 6.89 31.12 0.21 -5.12 16 15 C 0.10 2.80 4.39 45.44 0.20 3.00 16 16 H 0.08 2.77 8.06 -2.39 -0.02 2.75 16 17 N -0.84 -18.09 9.33 -166.50 -1.55 -19.64 16 18 C -0.06 -1.66 1.34 -51.66 -0.07 -1.73 16 19 C -0.12 -2.31 8.20 71.98 0.59 -1.72 16 20 C -0.12 -3.47 7.64 71.98 0.55 -2.92 16 21 H 0.05 2.08 6.97 -2.39 -0.02 2.06 16 22 H 0.09 2.76 5.28 -2.39 -0.01 2.75 16 23 H 0.01 0.43 8.10 -2.39 -0.02 0.41 16 24 H 0.03 1.62 5.06 -2.39 -0.01 1.61 16 25 H -0.02 -1.06 7.14 -2.39 -0.02 -1.08 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.05 1.93 5.79 -2.39 -0.01 1.91 16 28 H 0.10 2.39 7.59 -2.39 -0.02 2.37 16 29 H 0.34 6.73 9.08 -89.69 -0.81 5.91 16 30 H 0.35 6.14 6.98 -89.70 -0.63 5.52 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.10 6.18 -2.39 -0.01 1.09 16 34 H 0.05 1.57 7.29 -2.39 -0.02 1.56 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.46 6.51 -2.38 -0.02 1.44 16 Total: -1.00 -65.70 271.82 0.62 -65.08 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.42 Total: 16.74 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.75 Total: -24.19 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -4.59 Total: -104.16 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -65.70 0.62 -65.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405227977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.216 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds