Wall clock time and date at job start Mon Mar 30 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 110.28425 * 2 1 4 4 C 1.54253 * 110.32523 * 237.87622 * 2 1 3 5 5 C 1.54386 * 105.06234 * 241.10213 * 4 2 1 6 6 N 1.48566 * 104.58940 * 23.84731 * 5 4 2 7 7 C 1.46905 * 110.99632 * 200.96181 * 6 5 4 8 8 C 1.52993 * 109.46726 * 174.69036 * 7 6 5 9 9 C 1.53007 * 109.47229 * 174.74335 * 8 7 6 10 10 C 1.50693 * 109.47185 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00399 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99839 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99772 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00155 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47207 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47316 * 119.99773 * 14 12 10 17 17 H 1.48504 * 109.47162 * 239.99801 * 14 12 10 18 18 C 1.48555 * 104.22589 * 320.52004 * 6 5 4 19 19 H 1.08999 * 109.46333 * 180.67727 * 1 2 3 20 20 H 1.08994 * 109.47359 * 60.67644 * 1 2 3 21 21 H 1.09001 * 109.46823 * 300.66941 * 1 2 3 22 22 H 1.00905 * 111.00023 * 300.70169 * 3 2 1 23 23 H 1.00901 * 110.99972 * 64.65798 * 3 2 1 24 24 H 1.08999 * 110.32267 * 359.97438 * 4 2 1 25 25 H 1.09004 * 110.32822 * 122.10250 * 4 2 1 26 26 H 1.08990 * 110.41279 * 142.62880 * 5 4 2 27 27 H 1.08997 * 110.40880 * 265.07831 * 5 4 2 28 28 H 1.08998 * 109.46987 * 294.69119 * 7 6 5 29 29 H 1.09000 * 109.46820 * 54.68979 * 7 6 5 30 30 H 1.09002 * 109.47549 * 294.73756 * 8 7 6 31 31 H 1.09001 * 109.47643 * 54.74061 * 8 7 6 32 32 H 1.09002 * 109.46383 * 300.00135 * 9 8 7 33 33 H 1.09001 * 109.47032 * 59.99352 * 9 8 7 34 34 H 0.97003 * 119.99801 * 180.02562 * 13 12 10 35 35 H 1.09003 * 110.41203 * 280.70856 * 18 6 5 36 36 H 1.08995 * 110.41025 * 158.26154 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0393 1.3779 0.0000 4 6 2.0658 -0.7692 -1.2250 5 6 2.8808 -1.9415 -0.6377 6 7 2.3149 -2.1473 0.7205 7 6 3.2652 -2.8608 1.5841 8 6 2.7043 -2.9372 3.0055 9 6 3.6299 -3.7919 3.8738 10 6 3.0771 -3.8676 5.2736 11 1 2.1578 -3.3570 5.5196 12 6 3.7455 -4.5881 6.2407 13 7 4.8653 -5.2095 5.9413 14 14 3.0607 -4.6814 7.9761 15 1 1.7994 -3.9014 8.0532 16 1 2.7887 -6.0990 8.3254 17 1 4.0499 -4.1178 8.9296 18 6 2.0663 -0.7722 1.2246 19 1 -0.3632 -1.0276 0.0121 20 1 -0.3634 0.5033 -0.8959 21 1 -0.3633 0.5242 0.8839 22 1 1.7135 1.8839 -0.8100 23 1 1.7865 1.8569 0.8513 24 1 1.2388 -1.1471 -1.8261 25 1 2.7067 -0.1244 -1.8264 26 1 2.7491 -2.8375 -1.2442 27 1 3.9361 -1.6764 -0.5736 28 1 3.4192 -3.8690 1.1996 29 1 4.2157 -2.3276 1.5967 30 1 2.6379 -1.9332 3.4244 31 1 1.7117 -3.3869 2.9808 32 1 3.6962 -4.7960 3.4548 33 1 4.6225 -3.3422 3.8985 34 1 5.3354 -5.7166 6.6216 35 1 2.9942 -0.3240 1.5800 36 1 1.3214 -0.7878 2.0201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405807142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:43 Heat of formation + Delta-G solvation = -15.518854 kcal Electronic energy + Delta-G solvation = -14300.971542 eV Core-core repulsion = 12011.985668 eV Total energy + Delta-G solvation = -2288.985874 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35281 -35.38538 -33.44180 -31.63158 -29.43316 -28.82602 -26.74549 -25.33814 -22.74905 -20.98639 -20.20466 -19.04040 -16.37402 -16.02530 -15.47291 -15.19194 -14.42407 -14.20498 -13.88837 -13.44411 -13.11459 -12.84355 -12.30496 -12.10899 -11.93668 -11.37240 -11.22870 -11.08627 -10.94098 -10.76432 -10.63450 -10.46811 -10.35597 -9.62652 -9.29122 -9.00214 -8.84851 -8.31159 -8.16846 -5.96283 -3.98113 3.33436 3.40617 3.45159 4.14836 4.48899 4.54584 4.67440 4.75033 4.98048 5.35589 5.37223 5.39572 5.50457 5.73743 5.84201 5.86054 5.87911 5.95918 5.98813 6.06176 6.13896 6.17545 6.36325 6.70261 6.81995 6.98859 7.15236 7.27872 7.29196 7.44181 7.72720 7.88195 8.04536 8.47978 9.09266 9.65664 11.15292 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052049 B = 0.005602 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.824299 B = 4996.972904 C = 5289.744465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.839 5.839 4 C -0.112 4.112 5 C 0.033 3.967 6 N -0.509 5.509 7 C 0.045 3.955 8 C -0.105 4.105 9 C 0.021 3.979 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.046 3.954 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.338 0.662 23 H 0.341 0.659 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 10.413 -13.249 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.368 5.368 4 C -0.150 4.150 5 C -0.096 4.096 6 N -0.233 5.233 7 C -0.082 4.082 8 C -0.143 4.143 9 C -0.016 4.016 10 C -0.555 4.555 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.083 4.083 19 H 0.089 0.911 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.151 0.849 23 H 0.154 0.846 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.042 9.632 -13.214 17.433 hybrid contribution -0.495 0.609 1.121 1.368 sum -6.537 10.241 -12.094 17.143 Atomic orbital electron populations 1.22531 0.96236 1.03200 1.00943 1.21569 0.92306 0.88760 0.96052 1.59002 1.67057 1.03092 1.07654 1.22375 0.99650 0.96396 0.96579 1.23062 0.96914 0.97929 0.91672 1.65473 1.41671 1.14241 1.01912 1.22465 0.92789 0.98222 0.94764 1.21647 1.00450 1.00412 0.91819 1.19081 0.94280 0.94594 0.93682 1.21289 1.08423 1.30832 0.94987 0.92686 1.25031 0.94981 0.95625 0.98905 1.69982 1.16489 1.33357 1.33788 0.86547 0.79028 0.77742 0.84752 1.19760 1.21013 1.21057 1.23097 1.00605 0.88755 0.95837 0.91055 0.93142 0.92830 0.84946 0.84637 0.91280 0.90862 0.90468 0.93867 0.90936 0.95163 0.93671 0.92607 0.96543 0.96810 0.93115 0.92827 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.52 37.16 0.32 -1.44 16 2 C 0.11 1.23 1.24 -130.22 -0.16 1.07 16 3 N -0.84 -8.47 8.81 1.85 0.02 -8.45 16 4 C -0.11 -1.27 6.43 -25.35 -0.16 -1.43 16 5 C 0.03 0.44 6.49 -2.17 -0.01 0.42 16 6 N -0.51 -8.12 5.45 -229.97 -1.25 -9.37 16 7 C 0.05 0.84 4.93 -3.82 -0.02 0.82 16 8 C -0.11 -2.28 4.86 -26.73 -0.13 -2.41 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.05 0.67 4.57 -2.18 -0.01 0.66 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.34 2.76 9.04 -39.29 -0.36 2.40 16 23 H 0.34 3.15 9.03 -39.29 -0.35 2.80 16 24 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 25 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.03 0.56 7.97 -51.93 -0.41 0.15 16 30 H 0.04 0.96 7.21 -51.93 -0.37 0.59 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 36 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -30.67 288.37 -8.35 -39.02 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.44 Total: -0.11 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.73 Total: -15.71 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.50 Total: -44.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.67 -8.35 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405807142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.506 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds