Wall clock time and date at job start Mon Mar 30 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46893 * 110.87494 * 2 1 4 4 C 1.55139 * 111.02025 * 123.86755 * 2 1 3 5 5 C 1.54318 * 103.01588 * 153.75964 * 4 2 1 6 6 N 1.47447 * 107.23660 * 337.71452 * 5 4 2 7 7 C 1.46894 * 111.00354 * 236.74351 * 6 5 4 8 8 C 1.52994 * 109.47303 * 174.90406 * 7 6 5 9 9 C 1.53000 * 109.47325 * 174.70180 * 8 7 6 10 10 C 1.50704 * 109.47292 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37866 * 120.00213 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99986 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00264 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46987 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47198 * 120.00025 * 14 12 10 17 17 H 1.48499 * 109.47122 * 240.00124 * 14 12 10 18 18 C 1.47845 * 108.56148 * 359.01325 * 6 5 4 19 19 H 1.09000 * 109.46790 * 183.84332 * 1 2 3 20 20 H 1.08998 * 109.47092 * 303.84722 * 1 2 3 21 21 H 1.09003 * 109.46816 * 63.84459 * 1 2 3 22 22 H 1.00906 * 111.00043 * 56.15796 * 3 2 1 23 23 H 1.00901 * 111.00132 * 180.10472 * 3 2 1 24 24 H 1.09002 * 110.70880 * 35.38315 * 4 2 1 25 25 H 1.08992 * 110.71263 * 272.13965 * 4 2 1 26 26 H 1.09007 * 109.89131 * 218.31129 * 5 4 2 27 27 H 1.08998 * 109.89245 * 97.12404 * 5 4 2 28 28 H 1.09000 * 109.47036 * 294.90435 * 7 6 5 29 29 H 1.08995 * 109.47421 * 54.90161 * 7 6 5 30 30 H 1.09003 * 109.47194 * 294.70089 * 8 7 6 31 31 H 1.09005 * 109.47413 * 54.70074 * 8 7 6 32 32 H 1.09003 * 109.47347 * 299.99775 * 9 8 7 33 33 H 1.08995 * 109.47262 * 60.00109 * 9 8 7 34 34 H 0.97004 * 119.99782 * 179.97438 * 13 12 10 35 35 H 1.08998 * 110.37065 * 142.92385 * 18 6 5 36 36 H 1.09002 * 110.37185 * 265.15068 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0535 1.3725 0.0000 4 6 2.0865 -0.8070 1.2024 5 6 3.4701 -1.2702 0.6997 6 7 3.4317 -1.2410 -0.7740 7 6 3.7620 -2.5576 -1.3355 8 6 3.5886 -2.5220 -2.8552 9 6 4.0580 -3.8497 -3.4533 10 6 3.8866 -3.8149 -4.9501 11 1 3.4836 -2.9337 -5.4271 12 6 4.2452 -4.9075 -5.7107 13 7 4.7364 -5.9803 -5.1298 14 14 4.0335 -4.8641 -7.5661 15 1 3.4646 -3.5529 -7.9689 16 1 5.3534 -5.0533 -8.2196 17 1 3.1134 -5.9518 -7.9849 18 6 2.0849 -0.8055 -1.2011 19 1 -0.3633 -1.0254 0.0689 20 1 -0.3633 0.5724 0.8535 21 1 -0.3633 0.4530 -0.9225 22 1 1.6922 1.8973 0.7824 23 1 3.0625 1.3747 -0.0017 24 1 1.4488 -1.6639 1.4198 25 1 2.1893 -0.1692 2.0803 26 1 3.6697 -2.2846 1.0453 27 1 4.2428 -0.5932 1.0640 28 1 4.7951 -2.8070 -1.0934 29 1 3.0977 -3.3105 -0.9115 30 1 2.5374 -2.3659 -3.0974 31 1 4.1819 -1.7069 -3.2696 32 1 5.1093 -4.0059 -3.2112 33 1 3.4647 -4.6648 -3.0389 34 1 4.9884 -6.7492 -5.6650 35 1 2.1539 -0.1706 -2.0844 36 1 1.4533 -1.6702 -1.4046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405807143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:46 Heat of formation + Delta-G solvation = -16.883638 kcal Electronic energy + Delta-G solvation = -14348.783212 eV Core-core repulsion = 12059.738157 eV Total energy + Delta-G solvation = -2289.045055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51516 -35.26079 -33.31833 -31.45705 -29.43827 -29.23722 -26.81488 -25.37166 -22.78254 -20.79467 -20.14880 -19.21888 -16.37220 -15.93850 -15.80069 -14.87967 -14.53810 -14.41669 -13.95256 -13.31914 -12.99692 -12.83481 -12.26274 -12.07890 -11.90041 -11.63814 -11.28640 -11.15349 -11.05596 -10.81294 -10.69867 -10.46957 -10.37407 -9.65857 -9.29927 -9.00406 -8.72387 -8.31465 -8.02098 -5.96603 -3.98422 3.33732 3.40979 3.45953 4.18958 4.38722 4.49749 4.58897 4.70415 4.93035 5.23892 5.36598 5.39377 5.56152 5.66027 5.71560 5.76928 5.80590 5.85023 5.93662 6.04504 6.09185 6.27850 6.34336 6.71538 6.83553 7.12115 7.14031 7.30433 7.42473 7.45051 7.72156 7.86959 8.04051 8.47667 9.09025 9.65586 11.14964 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.005650 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.446708 B = 4954.164265 C = 5218.760779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.106 3.894 3 N -0.828 5.828 4 C -0.173 4.173 5 C 0.039 3.961 6 N -0.530 5.530 7 C 0.052 3.948 8 C -0.107 4.107 9 C 0.022 3.978 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.055 3.945 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.334 0.666 23 H 0.349 0.651 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 10.713 12.831 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 N -0.358 5.358 4 C -0.214 4.214 5 C -0.090 4.090 6 N -0.254 5.254 7 C -0.076 4.076 8 C -0.145 4.145 9 C -0.016 4.016 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.073 4.073 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.147 0.853 23 H 0.163 0.837 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.961 10.959 11.890 17.234 hybrid contribution -0.159 -1.073 0.279 1.120 sum -6.120 9.886 12.168 16.830 Atomic orbital electron populations 1.21674 0.93294 1.01802 1.02359 1.21936 0.94637 0.88323 0.93926 1.58751 1.14370 1.12403 1.50282 1.23626 0.97839 1.00984 0.98914 1.22809 0.96385 1.00681 0.89087 1.63699 1.26930 1.28502 1.06254 1.22483 1.00364 0.87261 0.97453 1.21687 1.00397 1.01249 0.91202 1.19077 0.96432 0.90818 0.95273 1.21296 1.41696 1.00236 0.92271 0.92621 1.25028 0.95335 0.95574 0.98604 1.69983 1.43744 1.04614 1.35356 0.86543 0.77742 0.77998 0.85786 1.19701 1.21012 1.21071 1.23109 0.88810 0.97788 0.97558 0.92126 0.92789 0.91531 0.85318 0.83672 0.91145 0.91415 0.92757 0.91164 0.91122 0.95479 0.93524 0.92494 0.96572 0.96888 0.93128 0.89374 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.94 37.16 0.33 -1.02 16 2 C 0.11 1.21 1.19 -129.47 -0.15 1.06 16 3 N -0.83 -8.88 9.10 2.45 0.02 -8.85 16 4 C -0.17 -1.86 6.09 -24.91 -0.15 -2.01 16 5 C 0.04 0.49 6.55 -2.83 -0.02 0.47 16 6 N -0.53 -8.22 5.28 -231.26 -1.22 -9.44 16 7 C 0.05 0.94 4.63 -3.83 -0.02 0.92 16 8 C -0.11 -2.31 4.81 -26.73 -0.13 -2.44 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 14 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.06 0.81 4.55 -2.30 -0.01 0.80 16 19 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.33 2.88 9.02 -39.29 -0.35 2.52 16 23 H 0.35 3.88 8.65 -39.29 -0.34 3.54 16 24 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.05 0.99 6.94 -51.93 -0.36 0.63 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 0.82 7.20 -51.93 -0.37 0.45 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -30.35 287.70 -8.27 -38.61 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.42 Total: 0.62 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.70 Total: -15.59 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.46 Total: -45.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.35 -8.27 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405807143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.731 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds