Wall clock time and date at job start Mon Mar 30 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46893 * 110.87494 * 2 1 4 4 C 1.55139 * 111.02025 * 123.86755 * 2 1 3 5 5 C 1.54318 * 103.01588 * 153.75964 * 4 2 1 6 6 N 1.47447 * 107.23660 * 337.71452 * 5 4 2 7 7 C 1.46894 * 111.00354 * 236.74351 * 6 5 4 8 8 C 1.52994 * 109.47303 * 174.90406 * 7 6 5 9 9 C 1.53000 * 109.47325 * 174.70180 * 8 7 6 10 10 C 1.50704 * 109.47292 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37866 * 120.00213 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99986 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00264 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46987 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47198 * 120.00025 * 14 12 10 17 17 H 1.48499 * 109.47122 * 240.00124 * 14 12 10 18 18 C 1.47845 * 108.56148 * 359.01325 * 6 5 4 19 19 H 1.09000 * 109.46790 * 183.84332 * 1 2 3 20 20 H 1.08998 * 109.47092 * 303.84722 * 1 2 3 21 21 H 1.09003 * 109.46816 * 63.84459 * 1 2 3 22 22 H 1.00906 * 111.00043 * 56.15796 * 3 2 1 23 23 H 1.00901 * 111.00132 * 180.10472 * 3 2 1 24 24 H 1.09002 * 110.70880 * 35.38315 * 4 2 1 25 25 H 1.08992 * 110.71263 * 272.13965 * 4 2 1 26 26 H 1.09007 * 109.89131 * 218.31129 * 5 4 2 27 27 H 1.08998 * 109.89245 * 97.12404 * 5 4 2 28 28 H 1.09000 * 109.47036 * 294.90435 * 7 6 5 29 29 H 1.08995 * 109.47421 * 54.90161 * 7 6 5 30 30 H 1.09003 * 109.47194 * 294.70089 * 8 7 6 31 31 H 1.09005 * 109.47413 * 54.70074 * 8 7 6 32 32 H 1.09003 * 109.47347 * 299.99775 * 9 8 7 33 33 H 1.08995 * 109.47262 * 60.00109 * 9 8 7 34 34 H 0.97004 * 119.99782 * 179.97438 * 13 12 10 35 35 H 1.08998 * 110.37065 * 142.92385 * 18 6 5 36 36 H 1.09002 * 110.37185 * 265.15068 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0535 1.3725 0.0000 4 6 2.0865 -0.8070 1.2024 5 6 3.4701 -1.2702 0.6997 6 7 3.4317 -1.2410 -0.7740 7 6 3.7620 -2.5576 -1.3355 8 6 3.5886 -2.5220 -2.8552 9 6 4.0580 -3.8497 -3.4533 10 6 3.8866 -3.8149 -4.9501 11 1 3.4836 -2.9337 -5.4271 12 6 4.2452 -4.9075 -5.7107 13 7 4.7364 -5.9803 -5.1298 14 14 4.0335 -4.8641 -7.5661 15 1 3.4646 -3.5529 -7.9689 16 1 5.3534 -5.0533 -8.2196 17 1 3.1134 -5.9518 -7.9849 18 6 2.0849 -0.8055 -1.2011 19 1 -0.3633 -1.0254 0.0689 20 1 -0.3633 0.5724 0.8535 21 1 -0.3633 0.4530 -0.9225 22 1 1.6922 1.8973 0.7824 23 1 3.0625 1.3747 -0.0017 24 1 1.4488 -1.6639 1.4198 25 1 2.1893 -0.1692 2.0803 26 1 3.6697 -2.2846 1.0453 27 1 4.2428 -0.5932 1.0640 28 1 4.7951 -2.8070 -1.0934 29 1 3.0977 -3.3105 -0.9115 30 1 2.5374 -2.3659 -3.0974 31 1 4.1819 -1.7069 -3.2696 32 1 5.1093 -4.0059 -3.2112 33 1 3.4647 -4.6648 -3.0389 34 1 4.9884 -6.7492 -5.6650 35 1 2.1539 -0.1706 -2.0844 36 1 1.4533 -1.6702 -1.4046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405807143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:46 Heat of formation + Delta-G solvation = -38.988549 kcal Electronic energy + Delta-G solvation = -14349.741753 eV Core-core repulsion = 12059.738157 eV Total energy + Delta-G solvation = -2290.003596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60091 -36.72761 -35.14858 -33.18203 -30.59005 -30.26087 -28.34287 -26.82854 -24.47250 -22.25309 -21.54334 -20.35584 -18.51227 -17.02881 -16.91336 -16.47521 -16.20727 -15.63473 -15.12223 -14.63566 -14.42665 -14.04026 -13.90710 -13.42513 -13.31448 -12.90977 -12.80742 -12.64176 -12.45379 -12.28913 -12.05195 -11.93664 -11.69967 -11.55102 -11.37166 -11.07643 -10.57219 -9.56632 -9.26416 -8.21589 -6.32808 1.39305 1.39734 1.53598 2.40254 3.01260 3.11511 3.47687 3.63746 3.73555 4.01397 4.17106 4.31510 4.36798 4.39193 4.66798 4.67907 4.75047 4.82342 4.84254 4.92264 5.00357 5.04326 5.09751 5.15074 5.22934 5.32680 5.49750 5.70701 5.83262 6.04846 6.07347 6.25506 6.31929 6.68956 6.83638 7.36620 8.90684 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.005650 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.446708 B = 4954.164265 C = 5218.760779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.113 3.887 3 N -0.833 5.833 4 C -0.163 4.163 5 C 0.035 3.965 6 N -0.536 5.536 7 C 0.064 3.936 8 C -0.090 4.090 9 C 0.026 3.974 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.051 3.949 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.349 0.651 23 H 0.348 0.652 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.050 0.950 32 H -0.008 1.008 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 11.906 13.247 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.018 3.982 3 N -0.364 5.364 4 C -0.204 4.204 5 C -0.093 4.093 6 N -0.260 5.260 7 C -0.064 4.064 8 C -0.128 4.128 9 C -0.012 4.012 10 C -0.581 4.581 11 H 0.076 0.924 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.077 4.077 19 H 0.080 0.920 20 H 0.093 0.907 21 H 0.077 0.923 22 H 0.164 0.836 23 H 0.161 0.839 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.734 12.173 12.329 18.589 hybrid contribution 0.099 -1.438 0.178 1.453 sum -6.635 10.735 12.506 17.767 Atomic orbital electron populations 1.21663 0.92130 1.02217 1.02903 1.21846 0.95404 0.88419 0.92489 1.58693 1.14321 1.12042 1.51321 1.23578 0.96247 1.01260 0.99268 1.22914 0.98257 1.01113 0.87010 1.63628 1.27709 1.26350 1.08327 1.22204 1.00170 0.88972 0.95072 1.21414 0.99896 0.97974 0.93531 1.18971 0.94634 0.92728 0.94823 1.21700 1.42122 1.00619 0.93647 0.92441 1.25989 0.94656 0.94996 1.04165 1.70106 1.44367 1.05379 1.37564 0.85377 0.78056 0.78494 0.79004 1.18710 1.20185 1.20165 1.23105 0.88389 0.97610 0.98607 0.92042 0.90748 0.92273 0.83620 0.83876 0.90986 0.88984 0.92985 0.89815 0.91568 0.95631 0.93425 0.93148 0.98930 0.99122 0.92711 0.91159 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.94 71.98 0.64 -1.73 16 2 C 0.11 2.36 1.19 4.91 0.01 2.37 16 3 N -0.83 -15.98 9.10 -146.15 -1.33 -17.31 16 4 C -0.16 -3.07 6.09 31.77 0.19 -2.88 16 5 C 0.03 0.82 6.55 86.65 0.57 1.39 16 6 N -0.54 -16.29 5.28 -885.57 -4.67 -20.97 16 7 C 0.06 2.34 4.63 86.30 0.40 2.74 16 8 C -0.09 -3.97 4.81 30.59 0.15 -3.83 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.54 -32.09 9.11 25.60 0.23 -31.85 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 13 N -0.93 -57.98 13.29 21.44 0.28 -57.70 16 14 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 C 0.05 1.47 4.55 86.77 0.39 1.86 16 19 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 20 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.35 4.96 9.02 -89.69 -0.81 4.15 16 23 H 0.35 6.99 8.65 -89.69 -0.78 6.22 16 24 H 0.07 1.36 8.00 -2.39 -0.02 1.35 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.26 7.56 -2.38 -0.02 1.25 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.03 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.05 2.06 6.94 -2.39 -0.02 2.04 16 31 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 32 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.28 7.20 -2.39 -0.02 1.27 16 Total: -1.00 -65.15 287.70 -1.04 -66.19 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.54 Total: 12.41 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 3.20 Total: -29.92 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -5.72 Total: -95.97 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.15 -1.04 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405807143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds